Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060196.seq
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41007| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_4522| Best HMM Match : Plus-3 (HMM E-Value=3.8)                     35   0.050
SB_21006| Best HMM Match : GASA (HMM E-Value=0.88)                     29   3.3  
SB_18489| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_41007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +3

Query: 270 QIQKIRNVSAPKAN--------EESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTPP 425
           QI KI+    P+++        E    A RML   L DG      +E   IP+L   TPP
Sbjct: 81  QIMKIKGKDDPESHLDKKHTNWEPKVKASRMLFFQLSDGGQQIQAMEYQPIPTLQALTPP 140

Query: 426 GTKLLLKNE 452
           GTK+ L+ +
Sbjct: 141 GTKVCLQRD 149


>SB_4522| Best HMM Match : Plus-3 (HMM E-Value=3.8)
          Length = 123

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
 Frame = +3

Query: 270 QIQKIRNVSAPKAN--------EESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTPP 425
           QI KI+    P+++        E    A RML   L DG      +E   IP+L   TPP
Sbjct: 61  QIMKIKGKDDPESHLDKKHTNWEPKVKASRMLFFQLSDGGQQIQAMEYQPIPTLQALTPP 120

Query: 426 GTK 434
           GTK
Sbjct: 121 GTK 123


>SB_21006| Best HMM Match : GASA (HMM E-Value=0.88)
          Length = 288

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +3

Query: 261 VVVQIQKIRNVSAPKANEESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTPPGTKLL 440
           V+  +++ R + A +  ++ T        T  +   T +GL+ +   S S  TP  T L 
Sbjct: 61  VLYTMERSRRIRAQRNTDDGTETRLRRVCTTKECVRTASGLQENENLSTSHTTPKSTTLY 120

Query: 441 LKN-EELEVCHGVVWLTPSVISVLAEQ 518
            K  +  +V + VV L P++IS + E+
Sbjct: 121 DKEGQSRKVLNSVVVL-PAIISAMDEK 146


>SB_18489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
 Frame = +3

Query: 270 QIQKIRNVSAPKAN--------EESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTPP 425
           QI KI+    P+++        E    A RML   L DG      +E   IP+L   TPP
Sbjct: 61  QIMKIKGKDDPESHLDKKHTNWEPKVKASRMLFFQLSDGGQQIQAMEYQIIPTLQALTPP 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,779,774
Number of Sequences: 59808
Number of extensions: 375550
Number of successful extensions: 961
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)