Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060196.seq
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025722-2|AAK68508.1|  605|Caenorhabditis elegans Hypothetical ...    51   8e-07
Z78017-2|CAD44160.1|  615|Caenorhabditis elegans Hypothetical pr...    44   9e-05
Z73976-10|CAD44151.1|  615|Caenorhabditis elegans Hypothetical p...    44   9e-05
AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical...    28   6.7  

>AC025722-2|AAK68508.1|  605|Caenorhabditis elegans Hypothetical
           protein Y50D4C.3 protein.
          Length = 605

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 5/129 (3%)
 Frame = +3

Query: 258 PVVVQIQKIRNVSAPKANEE---STSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTPPG 428
           P V+Q+ + RNVS P+  EE   +  A  +++L   DG  + + L +  IP ++ +TPPG
Sbjct: 63  PCVLQLLRYRNVSVPRIKEELNQTDPAHSIIRLFFTDGHSSISALLLQSIPGITSDTPPG 122

Query: 429 TKLLLKNEELEVCHGVVWLTPSVISVLAEQY--LI*LKNGN*TEVLPNTQEEA*ELKEGP 602
           TK+L+   +++V  G + L    I +L  +   +I   N   + V     + +     G 
Sbjct: 123 TKILILG-KVDVEGGFLILGKKDIRILGGKVDEMIEKWNVEKSSVRAGGFKSSVGKGTGA 181

Query: 603 SPWIPFGQR 629
             WI FG+R
Sbjct: 182 PKWISFGKR 190


>Z78017-2|CAD44160.1|  615|Caenorhabditis elegans Hypothetical
           protein T07C12.12 protein.
          Length = 615

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = +3

Query: 303 KANEESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTPPGTKLLL 443
           K N+      R+LKLTL DG+ T   +E    P LS++  PGTK+L+
Sbjct: 125 KDNDTDQKPSRLLKLTLFDGETTLKAIEFWKCPQLSLHYKPGTKILI 171


>Z73976-10|CAD44151.1|  615|Caenorhabditis elegans Hypothetical
           protein T07C12.12 protein.
          Length = 615

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = +3

Query: 303 KANEESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTPPGTKLLL 443
           K N+      R+LKLTL DG+ T   +E    P LS++  PGTK+L+
Sbjct: 125 KDNDTDQKPSRLLKLTLFDGETTLKAIEFWKCPQLSLHYKPGTKILI 171


>AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical
           protein Y73F8A.17 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 105 FDRRRHRYDNRKWSNSRCKHS*QKSFRLRFERH 203
           FD  R+ + N KW  S+ +H+ +K   +++  H
Sbjct: 62  FDNIRYGFKNGKWGPSKVRHATKKEQEIKYFLH 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,985,488
Number of Sequences: 27780
Number of extensions: 278035
Number of successful extensions: 667
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)