Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060196.seq
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.5  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   6.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.0  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   6.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 549 TEVLPNTQEEA*ELKEGPSPW 611
           T+V+P TQE    +K  P  W
Sbjct: 531 TDVIPGTQEHVCGVKGIPCSW 551


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 209 KDRYLKTLSRIRLN*KPRCCSNSE 280
           +D +LKT  R+    KP  CS+ +
Sbjct: 21  RDHHLKTHMRLHTGEKPYHCSHCD 44


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 1   GTSLIIFNSFSQNNVNLTLNQNM 69
           G  LI   S   NN+NL L QN+
Sbjct: 66  GYVLIHIGSVPVNNINLILLQNI 88


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 141 WSNSRCKHS*QKSFRLRFERHQRRI 215
           W +   K+   K FR++FE   +++
Sbjct: 102 WDSLANKYDPDKKFRVKFEEEAKKL 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,364
Number of Sequences: 438
Number of extensions: 3465
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)