Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060196.seq
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19950.3 68418.m02375 expressed protein 66 3e-11
At5g19950.2 68418.m02374 expressed protein 66 3e-11
At5g19950.1 68418.m02373 expressed protein 66 3e-11
At5g35250.1 68418.m04179 hypothetical protein includes At2g05890... 30 1.2
At5g62310.1 68418.m07822 incomplete root hair elongation (IRE) /... 29 2.0
At2g24580.1 68415.m02935 sarcosine oxidase family protein simila... 29 2.0
At3g33530.1 68416.m04290 transducin family protein / WD-40 repea... 29 3.6
At1g66230.1 68414.m07517 myb family transcription factor (MYB20)... 29 3.6
At5g65310.1 68418.m08216 homeobox-leucine zipper protein 5 (HB-5... 28 4.7
At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo... 28 4.7
At5g58840.1 68418.m07373 subtilase family protein contains simil... 28 4.7
At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing p... 27 8.2
At2g37520.1 68415.m04601 PHD finger family protein contains Pfam... 27 8.2
>At5g19950.3 68418.m02375 expressed protein
Length = 441
Score = 65.7 bits (153), Expect = 3e-11
Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Frame = +3
Query: 249 IRSPVVVQIQKIRNVSAPKANE--ESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTP 422
++ P V+QI +R+V+ A E S++ R+LK L DGK + LE SHIP+++ +
Sbjct: 87 LQGPKVLQISYVRDVTRSSAEEFVGSSTGKRVLKFALTDGKTEISALEYSHIPTINNDVT 146
Query: 423 PGTKLLLKNEELEVCHGVVWLTPSVISVL 509
PGTK+ L+N+ + + G+V LTP ++VL
Sbjct: 147 PGTKVRLENKAV-IRDGLVCLTPKEVTVL 174
>At5g19950.2 68418.m02374 expressed protein
Length = 443
Score = 65.7 bits (153), Expect = 3e-11
Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Frame = +3
Query: 249 IRSPVVVQIQKIRNVSAPKANE--ESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTP 422
++ P V+QI +R+V+ A E S++ R+LK L DGK + LE SHIP+++ +
Sbjct: 87 LQGPKVLQISYVRDVTRSSAEEFVGSSTGKRVLKFALTDGKTEISALEYSHIPTINNDVT 146
Query: 423 PGTKLLLKNEELEVCHGVVWLTPSVISVL 509
PGTK+ L+N+ + + G+V LTP ++VL
Sbjct: 147 PGTKVRLENKAV-IRDGLVCLTPKEVTVL 174
>At5g19950.1 68418.m02373 expressed protein
Length = 443
Score = 65.7 bits (153), Expect = 3e-11
Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Frame = +3
Query: 249 IRSPVVVQIQKIRNVSAPKANE--ESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTP 422
++ P V+QI +R+V+ A E S++ R+LK L DGK + LE SHIP+++ +
Sbjct: 87 LQGPKVLQISYVRDVTRSSAEEFVGSSTGKRVLKFALTDGKTEISALEYSHIPTINNDVT 146
Query: 423 PGTKLLLKNEELEVCHGVVWLTPSVISVL 509
PGTK+ L+N+ + + G+V LTP ++VL
Sbjct: 147 PGTKVRLENKAV-IRDGLVCLTPKEVTVL 174
>At5g35250.1 68418.m04179 hypothetical protein includes At2g05890,
At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
At1g39430, At2g10460, At4g03640, At5g35250
Length = 384
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 76 RETLKELGWHLTEEGIDTITENGQIQDVNILSK--KALDYDLRDISEGSL 219
RE +K+ LTE+ + + + +IQD+N +K + +D+ LRD + L
Sbjct: 61 REQIKKFERCLTEDVMGQVVDRSEIQDLNANNKPTEKIDFHLRDQHDNRL 110
>At5g62310.1 68418.m07822 incomplete root hair elongation (IRE) /
protein kinase, putative nearly identical to IRE
(incomplete root hair elongation) [Arabidopsis thaliana]
gi|6729346|dbj|BAA89783
Length = 1168
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 64 NMSLRETLKELGWHLTEEGIDTITENGQ---IQDVNILSKKALDYDLRDISEGSLPEDFV 234
N S +E L E+ +++ +D + + + ++NIL++ ++ +D S GSL
Sbjct: 557 NSSRQEDLDEISQRCSDDMLDCVPRSQNTFSLDELNILNEMSMTNGTKDSSAGSLTPPSP 616
Query: 235 KDPSKLEAPLLFKFRR 282
P + LL R+
Sbjct: 617 ATPRNSQVDLLLSGRK 632
>At2g24580.1 68415.m02935 sarcosine oxidase family protein similar
to peroxisomal sarcosine oxidase from Homo sapiens
[SP|Q9P0Z9], Oryctolagus cuniculus [SP|P79371], Mus
musculus [SP|Q9D826]
Length = 416
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 613 IHGEGPSFSSYASSCVFGKTSVQFP 539
I GE P+F+SY + V+G S+++P
Sbjct: 249 IDGEFPTFASYGAPYVYGTPSLEYP 273
>At3g33530.1 68416.m04290 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 11
(SP:Q9BZH6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies, 3
weak)|2763187|gb|T46504.1|T46504
Length = 1345
Score = 28.7 bits (61), Expect = 3.6
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +1
Query: 1 GTSLIIF-NSFSQNNVNLTLNQN--MSLRETLKELGWHLTEEGIDTITENGQIQDVNI-L 168
GTS I F N F + +L +++ +SL + K W L+ EG++ +N D+ I
Sbjct: 370 GTSSIDFDNPFDFYDESLLVSKTTFISLSDDGKIWKWVLSAEGVEDALKNASDLDMGIGA 429
Query: 169 SKKALDYDLRDISEGSLPEDFVKDPS 246
++ AL +++ SL ++ V P+
Sbjct: 430 TEAALPGAIQENDSSSLDDELVVAPT 455
>At1g66230.1 68414.m07517 myb family transcription factor (MYB20)
similar to myb-related transcription factor GI:1430846
from [Lycopersicon esculentum]; contains PFAM profile:
Myb DNA binding domain PF00249
Length = 282
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -1
Query: 628 LCPNGIHGEGPSFSSYASSCVFGKTSVQFPFFNHMRYCSANTDITDGVSH 479
+C N S SS++S+ +QFP F Y ++N D +GV +
Sbjct: 200 ICSNSTMSSSTSTSSHSSNDSSFLKDLQFPEFEWSDYGNSNNDNNNGVDN 249
>At5g65310.1 68418.m08216 homeobox-leucine zipper protein 5 (HB-5) /
HD-ZIP transcription factor 5 identical to
homeobox-leucine zipper protein ATHB-5 (HD-ZIP protein
ATHB-5) (SP:P46667) [Arabidopsis thaliana]
Length = 312
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +1
Query: 19 FNSFSQNNVNLTLNQNMSLRETLKELGWHLTEEGIDTITENGQIQDVNILSKKALDYDLR 198
F++ +N +L N SL +KEL L EG+ I ENG ++ V + ++
Sbjct: 140 FDALKRNRDSLQ-RDNDSLLGQIKELKAKLNVEGVKGIEENGALKAVEANQSVMANNEVL 198
Query: 199 DISEGS 216
++S S
Sbjct: 199 ELSHRS 204
>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
to HD-zip transcription factor Revoluta (GI:9759333)
{Arabidopsis thaliana}; contains Pfam profiles PF01852:
START domain and PF00046: Homeobox domain
Length = 842
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 634 LNLCPNGIHGEGPSFSSYASSCVFGKTSVQFPFFNHMR 521
L + P+ + G SFSS +S C+ + QFPF N+++
Sbjct: 611 LEVGPSPENASGNSFSSSSSRCIL-TIAFQFPFENNLQ 647
>At5g58840.1 68418.m07373 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo]; non-consensus acceptor site TT at exon 6
Length = 713
Score = 28.3 bits (60), Expect = 4.7
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = +3
Query: 264 VVQIQKIRNVSAPKANEESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTPPGTKLLL 443
V++ + I N +APK S+ P + + + VT G+EI S +N+P K
Sbjct: 429 VLKSEAIFNQAAPKVAGFSSRGPNTIAVDILKPDVTAPGVEILAAFS-PLNSPAQDKRDN 487
Query: 444 KNEELEVCHGVVWLTPSVISVLA 512
++ + V G P V V A
Sbjct: 488 RHVKYSVLSGTSMSCPHVAGVAA 510
>At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing
protein similar to brahma associated protein 60 kDa
[Drosophila melanogaster] GI:3378134, SWI/SNF-related,
matrix-associated, actin-dependent regulator of
chromatin D1 [Homo sapiens] GI:4566530; contains Pfam
profile PF02201: BAF60b domain of the SWIB complex
Length = 534
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 10 LIIFNSFSQNNVNLTLNQNMSLRE-TLKELGWHLTEEGIDTITENGQIQDVNILSKK 177
+ +FNSF+ N + N N TLK +G + E+G+D + G +Q N L K
Sbjct: 203 IYVFNSFANQNNTIPGNPNADPPTWTLKIIG-RILEDGVDP-DQPGFVQKANPLHPK 257
>At2g37520.1 68415.m04601 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 854
Score = 27.5 bits (58), Expect = 8.2
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 SPVVVQIQKIRNVSAPKANEESTSAPRMLKLTLHDGKVTC-TGLEISHIPSLSINTPPGT 431
+P VV + IRNV+ NEE A + + + + C TG+ + IP LS+N
Sbjct: 261 APRVVLEEVIRNVAGSALNEEGLRAWKGDGQQVSNRVIACLTGIILRIIP-LSVNALLSY 319
Query: 432 KLLLKNEELEVCHGVVWLTPSV 497
+L + E + C +L P +
Sbjct: 320 HFVLLS-ETDSCESCSYLGPGL 340
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,230,285
Number of Sequences: 28952
Number of extensions: 265416
Number of successful extensions: 738
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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