Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060195.seq
         (667 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4CTF9 Cluster: Putative uncharacterized protein; n=1; ...    34   2.7  
UniRef50_Q8IM60 Cluster: Putative uncharacterized protein; n=3; ...    33   4.7  
UniRef50_UPI00006CBA40 Cluster: hypothetical protein TTHERM_0049...    33   8.2  

>UniRef50_A4CTF9 Cluster: Putative uncharacterized protein; n=1;
           Synechococcus sp. WH 7805|Rep: Putative uncharacterized
           protein - Synechococcus sp. (strain WH7805)
          Length = 388

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 75  FRNPYTEQNSPKYYYCPCLVLFFDLSIFNFTFLKF*IYF*STLPSDLTCTN-LFMNCDVI 251
           F +    QN  KY+ CPC+ L  D       F+ +   F   L SDL  +N L +  D  
Sbjct: 248 FMDDLASQNLLKYFECPCISLTSD----GAPFMSYEQLFSCLLGSDLAVSNSLAVKGDYT 303

Query: 252 RLATNLRVCIDF 287
           +++  + +CI+F
Sbjct: 304 KVSGAINLCINF 315


>UniRef50_Q8IM60 Cluster: Putative uncharacterized protein; n=3;
           Eukaryota|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 3364

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 222 YKLNPKVAYFKSKFKISRT*N*KYLNQRTKLNKDNNNILVSFVQCKGYE-KFRNIYSH 52
           YK   K+   K K+      N KY+    K+N+  NN  V + +C G+E  F NI  H
Sbjct: 207 YKKEDKIKEIKRKYHDDIIINPKYMKYENKINRRCNN-FVLYKKCSGFEYDFINIILH 263


>UniRef50_UPI00006CBA40 Cluster: hypothetical protein
           TTHERM_00499290; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00499290 - Tetrahymena
           thermophila SB210
          Length = 1049

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 322 INYNEKRLYEYTKSIQTLKLVAKRITSQFINKLVQVKSEGSVLQ 191
           I   +  LYEYT  +  L  + K I+ Q+ N+  Q+K +  +LQ
Sbjct: 485 IQQKDNTLYEYTSKVSKLDELFKNISQQYQNENFQLKEQFQLLQ 528


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,917,456
Number of Sequences: 1657284
Number of extensions: 7188537
Number of successful extensions: 16998
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16970
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)