Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060195.seq
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)                28   5.9  
SB_27375| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.3e-07)         28   5.9  

>SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/90 (23%), Positives = 43/90 (47%)
 Frame = -2

Query: 657 FCPSSYFNYKKLHIHMYMFI*LYSFYCDIYSGYLAITFLYV*K*IKHKI*HA*LSKLKRF 478
           F  +S      L ++ Y ++ +Y++Y DIY+ YL +   Y+     +   +     +  +
Sbjct: 532 FGQNSVARLNYLDVYNY-YLDVYNYYLDIYNYYLDVYNYYLDVYNYYLDVYNYYLDVYNY 590

Query: 477 FLYIXNYSLIDFNLTLDYFLRRKVLLKNTI 388
           +L + NY L  +N  LD + + K  L  ++
Sbjct: 591 YLDVYNYYLDVYNYYLDVYNKDKCPLAKSV 620


>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
          Length = 333

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 638 LITKNYTYICICLYNYI 588
           L T+ Y Y+C C+Y+Y+
Sbjct: 254 LCTRIYAYVCACVYDYV 270


>SB_27375| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.3e-07)
          Length = 240

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 9   ITTSFKRQSHITCERVNICS*IFRNPYTEQNSPKY 113
           IT+SF R   + C R  +    +RNPY + +  KY
Sbjct: 106 ITSSFSRS--VVCSRPGVTERTWRNPYLKWDKAKY 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,321,703
Number of Sequences: 59808
Number of extensions: 221243
Number of successful extensions: 349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)