Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060194.seq
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.9  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   6.7  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   6.7  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   8.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.9  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = +2

Query: 362 RTKLKCRSKKLPQDVNPKGVFACNELDLSEVQVYGFDYDYT 484
           +T+L C    +  + + +G+ +  E+++   ++YG   +YT
Sbjct: 310 KTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYT 350


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 144 YSICVQTKRLV 112
           YSICVQT++ V
Sbjct: 133 YSICVQTEKSV 143


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 265 RARGLTPRNKLPTE 224
           +AR L+PRN  PT+
Sbjct: 196 KARDLSPRNGSPTD 209


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 235 IYFLESNLSHGFNSENIKILRSKECFIFEEIFY 333
           I F  S+    F  +N   LR    FIF  +F+
Sbjct: 74  ILFSRSDFFQQFECDNEPKLRHYLIFIFVNVFF 106


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +1

Query: 520 YNLGREYLLEKYNYPPEILKLEYKPNFAVRGLHY 621
           YN   +  L+    P  I + EY P F  +   Y
Sbjct: 196 YNPFAKAFLDAKERPDSIYQREYSPTFTQQQTQY 229


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,737
Number of Sequences: 336
Number of extensions: 3857
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)