Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060194.seq
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    28   1.4  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    25   7.2  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    25   7.2  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   7.2  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   7.2  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    25   9.5  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   9.5  

>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 344 LNEAYCRTKLKCRSKK 391
           L E YCR K++CR KK
Sbjct: 58  LKEIYCRLKIRCRLKK 73


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 590 LYSSFNISGG*LYFSNRYSLPRL*SRCSLWVYSVPRYSHS 471
           ++S F I     +  +RY  PRL      W+   P  SH+
Sbjct: 127 MFSDFGIYWAHRFLHHRYVYPRLHKLHHKWIICTPYASHA 166


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 580 LEYKPNFAVRGLHYDI 627
           LE KP  +VRGLHYDI
Sbjct: 482 LEKKP-LSVRGLHYDI 496


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 422 FACNELDLSEVQVYGFDYDYTLAHYKPTMNTCSIILVENI 541
           F   E  L+E   +G DY +    + P +N CS  ++ ++
Sbjct: 271 FLAWEHSLTEAVQFGIDYVHGAITHSPPINNCSTNILNHM 310


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 96  WKF*IRLIFLFVHKCCK-NWKLSAHLL*FYNNSKLSVKMSLLISSVGNLFLGVKPLARV* 272
           W + +   + F HK    +W +   LL F+    ++ K SLL    G   + V  +  + 
Sbjct: 587 WPWLLHADYAFSHKTISVSWSVLTSLLCFFTILPVNKKESLLFIFAGGFAMSVAGVFYIL 646

Query: 273 FRKH 284
           +R++
Sbjct: 647 YRRN 650


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 161 SAFIIILQ*FKTFGKNVFVNQFGW*FISWSQTSRTGLIQKT 283
           S FI + Q F  F   + V+   W F+SWS      L+ K+
Sbjct: 131 SNFIELSQ-FTAFEVELRVSHPNWAFVSWSHDDLNELVDKS 170


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 610 LEQQNWVCIPVSIFLEGNCTSLTDILYQDYR 518
           LEQQ  + + V   L G  TS+TD   +D+R
Sbjct: 397 LEQQARLHLKVQPVLSGGSTSITDKQEEDHR 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,341
Number of Sequences: 5004
Number of extensions: 62077
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)