Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060194.seq
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467...    48   5e-06
03_06_0129 - 31883732-31883854,31883989-31884051,31884213-318842...    36   0.037
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406...    33   0.15 
03_05_0247 + 22339443-22339633,22340415-22340748,22341589-223417...    28   7.5  
05_05_0220 + 23380290-23381581,23381997-23383458                       27   9.9  

>09_04_0174 +
           15346123-15346207,15346350-15346502,15346623-15346759,
           15346856-15347005,15347405-15347506,15347832-15347996,
           15348402-15348499,15348704-15348827,15349056-15349145,
           15349555-15349599,15350438-15350833
          Length = 514

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 17/31 (54%), Positives = 25/31 (80%)
 Frame = +2

Query: 404 VNPKGVFACNELDLSEVQVYGFDYDYTLAHY 496
           +NP+G++    + L ++QVYGFDYDYTL+HY
Sbjct: 76  MNPQGIYVNKNVKLDDLQVYGFDYDYTLSHY 106



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/49 (40%), Positives = 30/49 (61%)
 Frame = +1

Query: 502 HNEHLLYNLGREYLLEKYNYPPEILKLEYKPNFAVRGLHYDIEKGTSFK 648
           H + L+Y+L +++L+ +  YP   LK EY   F +RGL+YD  KG   K
Sbjct: 109 HLQCLIYDLAKKHLVNELKYPESCLKYEYDHGFPIRGLYYDRLKGCLLK 157


>03_06_0129 -
           31883732-31883854,31883989-31884051,31884213-31884272,
           31884724-31884784,31884934-31885004,31885313-31885389,
           31885856-31885913,31885995-31886048,31886279-31886297,
           31886359-31886466,31886574-31886690,31886836-31886919,
           31887079-31887171,31887279-31887499,31888294-31888371,
           31889237-31889499,31890109-31890247
          Length = 562

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 413 KGVFACNELDLSEVQVYGFDYDYTLAHYKP 502
           K +F    L++  +   GFD DYTLA YKP
Sbjct: 81  KEIFCNRSLNMRNITAVGFDMDYTLAQYKP 110



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 508 EHLLYNLGREYLLEKYNYPPEILKLEYKPNFAVRGLHYDIEKGTSFK 648
           E L Y+   E L++   YP E+L  ++   + VRGL  D ++G   K
Sbjct: 114 EALAYHGTIEKLVKDLGYPEELLTWQFDWKYMVRGLVLDKKRGNILK 160


>12_01_0513 +
           4059586-4059620,4060155-4060365,4060470-4060724,
           4060801-4060865,4061120-4061194,4061440-4061575,
           4061661-4061753,4061838-4061983,4062074-4062174,
           4062259-4062434,4063823-4063900,4063991-4064199,
           4064286-4064378,4064888-4064971,4065405-4065506,
           4065591-4065678,4065756-4065809,4065869-4066075,
           4066970-4067026,4067171-4067225,4067737-4067813,
           4067941-4068007,4068383-4068444,4068541-4068603,
           4068702-4068830
          Length = 905

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/78 (21%), Positives = 36/78 (46%)
 Frame = +2

Query: 419 VFACNELDLSEVQVYGFDYDYTLAHYKPTMNTCSIILVENIC*RSTITLQKY*NWNTNPI 598
           +F    +++ +++  GF  +YTL +YK T    + +  +          +K   WN N  
Sbjct: 382 IFCSRTVNMEDIKAIGFKMEYTLINYKVTFENLAYVEAKKRLVNGKYP-EKILEWNYNSE 440

Query: 599 LLFEVYIMTLKRGLLLKL 652
            +    I+  K+G ++K+
Sbjct: 441 HMIRGLIIDKKKGNIIKV 458


>03_05_0247 +
           22339443-22339633,22340415-22340748,22341589-22341738,
           22341832-22342080,22342171-22342257,22342346-22342424,
           22342518-22342624,22342725-22342849,22342940-22343027
          Length = 469

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 496 IVCQGIVIVKSIYLYFRKVQFIARKNTFRINILWKLFGSTFEF 368
           +V    V+V S+ L + +V++  ++      + W LFG T EF
Sbjct: 8   VVVAAAVVVSSLLLRWNEVRYSRKRGLPPGTMGWPLFGETTEF 50


>05_05_0220 + 23380290-23381581,23381997-23383458
          Length = 917

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 441 SNSLHAKTPLGLTSCGSFLDLHLS 370
           +NSL    P  L SCGS + L+LS
Sbjct: 123 ANSLSGYLPAALASCGSLVSLNLS 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,078,913
Number of Sequences: 37544
Number of extensions: 315932
Number of successful extensions: 625
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)