Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060194.seq
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3269| Best HMM Match : 5_nucleotid (HMM E-Value=0)                  50   1e-06
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_5950| Best HMM Match : 5_nucleotid (HMM E-Value=0.00026)            29   2.5  
SB_28490| Best HMM Match : Peptidase_C48 (HMM E-Value=0.51)            29   3.3  
SB_6278| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10)                 28   7.6  

>SB_3269| Best HMM Match : 5_nucleotid (HMM E-Value=0)
          Length = 403

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 27/78 (34%), Positives = 36/78 (46%)
 Frame = +2

Query: 278 KTLKYCEVKSALSLKKYSTRELLNEAYCRTKLKCRSKKLPQDVNPKGVFACNELDLSEVQ 457
           K    C  K   S     + + + + Y   K           V  +G+FA NEL L  + 
Sbjct: 20  KATSRCFQKRFFSRDGIRSVQEIKDVYIERKHSIEENYEHTVVQDQGIFANNELSLKYIN 79

Query: 458 VYGFDYDYTLAHYKPTMN 511
           VYGFDYDYTLA Y  T++
Sbjct: 80  VYGFDYDYTLASYSNTLH 97



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 19/41 (46%), Positives = 25/41 (60%)
 Frame = +1

Query: 514 LLYNLGREYLLEKYNYPPEILKLEYKPNFAVRGLHYDIEKG 636
           L+Y+L    LL  + YP  +  ++Y P FAVRGLHYD   G
Sbjct: 99  LIYDLAVGNLLSFFGYPKGVEGMKYNPEFAVRGLHYDTVNG 139


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = -3

Query: 207 FLPKVLNYCKIIINALIASSSYSICVQTKRLVLFKTSI*DGFINYFKH 64
           FLP V +Y  +   AL  ++SY++  +TK  V FK     GF+N  KH
Sbjct: 266 FLPWVKSYRNMDEIALDTAASYAVKERTKHGVSFKGG---GFVNRTKH 310


>SB_5950| Best HMM Match : 5_nucleotid (HMM E-Value=0.00026)
          Length = 172

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 568 EILKLEYKPNFAVRGLHYDIEKGTSFK 648
           ++L  +Y P F VRGL +D E G   K
Sbjct: 19  DLLSFQYDPIFPVRGLFFDCELGNLLK 45


>SB_28490| Best HMM Match : Peptidase_C48 (HMM E-Value=0.51)
          Length = 483

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 242 SWSQTSRTGLIQKTLKYCEVKSALSLKKYSTRELLNEAYCRTKLKC-RSKKL 394
           +W+  S + L+      CE KS L ++  S  E+  E   +++L+C RS+ L
Sbjct: 244 AWTSGSLSSLVSSNEALCECKSKLEVRVKSGIEIGEEFLDKSRLQCLRSRGL 295


>SB_6278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 357 IAVLNSNVDPKSFHKMLIL 413
           + ++ S++DPKSFH M+ L
Sbjct: 99  LGLIESHIDPKSFHHMMFL 117


>SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10)
          Length = 416

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = +3

Query: 357 IAVLNSNVDPKSFHKMLILKV-------FLRAMNWTFRKYKYMDLTMTI 482
           + ++ S++DPKSFH  + L         FLR++ +T  + K ++  M +
Sbjct: 117 LGLIESHIDPKSFHHRMFLAACCLEYFGFLRSVEFTVTQEKCIEQNMPL 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,668,612
Number of Sequences: 59808
Number of extensions: 392723
Number of successful extensions: 1179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)