Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060194.seq
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical ...    36   0.025
AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical ...    36   0.025
AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z70203-5|CAA94108.3|  429|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF003140-1|ABR92609.1|  538|Caenorhabditis elegans Hypothetical ...    29   3.8  
AC006603-6|ABB51200.1|  534|Caenorhabditis elegans Hypothetical ...    28   5.0  
U64858-8|AAB18286.3|  288|Caenorhabditis elegans Serpentine rece...    28   6.7  

>AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1a protein.
          Length = 556

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 508 EHLLYNLGREYLLEKYNYPPEILKLEYKPNFAVRGLHYDIEKGTSFK 648
           E+L +N+  + L++   YP EI   +Y P F VRGL ++ + G   K
Sbjct: 44  EYLAFNMAVQRLVDT-GYPEEIKSFKYDPIFPVRGLWFEFQFGNLLK 89



 Score = 31.1 bits (67), Expect = 0.71
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 419 VFACNELDLSEVQVYGFDYDYTLAHYK 499
           VF    L L ++  +GFD DYTL  YK
Sbjct: 13  VFVNRSLRLEKITHFGFDMDYTLVQYK 39


>AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1b protein.
          Length = 559

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 508 EHLLYNLGREYLLEKYNYPPEILKLEYKPNFAVRGLHYDIEKGTSFK 648
           E+L +N+  + L++   YP EI   +Y P F VRGL ++ + G   K
Sbjct: 47  EYLAFNMAVQRLVDT-GYPEEIKSFKYDPIFPVRGLWFEFQFGNLLK 92



 Score = 31.5 bits (68), Expect = 0.54
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 407 NP-KGVFACNELDLSEVQVYGFDYDYTLAHYK 499
           NP + VF    L L ++  +GFD DYTL  YK
Sbjct: 11  NPAERVFVNRSLRLEKITHFGFDMDYTLVQYK 42


>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 508 EHLLYNLGREYLLEKYNYPPEILKLEYKPNFAVRG 612
           E+L +N+  + L++   YP EI   +Y P F VRG
Sbjct: 14  EYLAFNMAVQRLVDT-GYPEEIKSFKYDPIFPVRG 47


>Z70203-5|CAA94108.3|  429|Caenorhabditis elegans Hypothetical
           protein C05G5.5 protein.
          Length = 429

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +1

Query: 184 IIQNFR*KCLC*SVRLVIYFLESNLSHGFNSENIKILRSKECFIF 318
           +IQN R   +    RL++YFL++NL+H  NS+ I   R +  F++
Sbjct: 7   LIQNIRTVKINVLTRLLVYFLQNNLAH--NSQQIN--RERNIFLW 47


>AF003140-1|ABR92609.1|  538|Caenorhabditis elegans Hypothetical
           protein C44E4.5 protein.
          Length = 538

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 247 PRNKLPTELINKDIFTESFELL*NYNKCADSFQFLQHL 134
           P N++ T L +  +F+   +L  +Y+KC DS QFL  +
Sbjct: 43  PSNEMIT-LQHMKVFSNDNQLFCDYSKCTDSQQFLYRI 79


>AC006603-6|ABB51200.1|  534|Caenorhabditis elegans Hypothetical
           protein B0524.1 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
 Frame = -2

Query: 640 KSPFQCHNVNLEQQNWV----CIP 581
           K+PF+ HN N E ++W+    C+P
Sbjct: 67  KTPFRLHNTNCEHRDWISDNLCLP 90


>U64858-8|AAB18286.3|  288|Caenorhabditis elegans Serpentine
           receptor, class t protein25 protein.
          Length = 288

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 414 LGLTSCGSFLDLHLSLVRQYASFNSSLVEYFF 319
           LGL  C  F+++ L + R     NSSL  YFF
Sbjct: 75  LGLWCCSCFMNILLLVNRTMNIANSSLSRYFF 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,211,440
Number of Sequences: 27780
Number of extensions: 327948
Number of successful extensions: 795
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)