Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060193.seq
         (664 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    24   1.3  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    23   2.2  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   9.0  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   9.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.0  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 231 LSLNGLKKYQYVIKLWWGY 175
           L+   LK+Y   +KLWW +
Sbjct: 45  LAKGSLKQYTCELKLWWEF 63


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 387 TSSPPCKTTICP 352
           T + PCK TICP
Sbjct: 3   THTLPCKCTICP 14


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 496 RQVLLFVPRLPEEYEVWMGK 555
           RQ L+F    PEE +   GK
Sbjct: 345 RQTLMFSATFPEEVQQLAGK 364


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 254 DMAATWSMGPGTLEVPLSL 310
           D+++ WS   G+  +PL L
Sbjct: 36  DLSSCWSEDMGSFSLPLDL 54


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 632 VHLLSHQHNRLHQTAYMFLKSLQAWSL 552
           +HL  ++   L + A+M LKSL+  +L
Sbjct: 121 IHLDDNRIESLERRAFMNLKSLKRLNL 147


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -3

Query: 407 HQYHSGSHLH 378
           H +H+G H+H
Sbjct: 322 HHHHAGHHIH 331


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,167
Number of Sequences: 336
Number of extensions: 4000
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)