Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060193.seq
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    29   0.60 
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces...    26   4.2  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    25   7.4  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   9.7  

>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 96  IRNVIRRRCLFSVRYFRPYQNSCNLS 173
           +R  IR+ C + +RY RPY +S   S
Sbjct: 412 LRTNIRKECTYDIRYKRPYVSSLKYS 437


>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 276

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 268 RRCHVDDIMKGNFIFEWFEKISIRDKTVVGI*DRLHEF*YG 146
           R CH+ ++      FEW   + IRD  ++ I D + E  YG
Sbjct: 32  RSCHLVNLDPAAENFEWEPTVDIRD--LISIDDVMEELDYG 70


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 10/36 (27%)
 Frame = -2

Query: 591 CIYVFEVTTGMEFAH----------PDFILLRKSGH 514
           C Y  EVT  +E+ H          P+ ILL +SGH
Sbjct: 258 CFYAAEVTAALEYLHLMGFIYRDLKPENILLHQSGH 293


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 6   EQQNNC*KHDKYVNIKLLIDHLITSTLMLKI 98
           ++  NC   D YV IK L D  +   L +KI
Sbjct: 86  DECKNCRTLDDYVRIKTLFDLAVQDYLSIKI 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,396
Number of Sequences: 5004
Number of extensions: 62092
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)