Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060193.seq
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698... 81 6e-16
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405... 34 0.12
03_02_0564 - 9477118-9477200,9477617-9477687,9477799-9477944,947... 29 3.3
08_02_0759 - 20851828-20851932,20852190-20852285,20853231-208533... 29 4.4
03_05_1011 + 29658144-29658310,29659531-29659676,29660526-296606... 29 4.4
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78... 28 5.8
>02_02_0120 +
6984482-6984643,6984748-6984797,6984936-6984996,
6985574-6985669,6985754-6985903,6986208-6986339,
6986641-6986768,6987285-6987327,6987935-6988018,
6989049-6989090,6989264-6989334,6989621-6989674,
6989789-6989894,6990038-6990106,6990824-6990967,
6992038-6992113,6992295-6992353
Length = 508
Score = 81.4 bits (192), Expect = 6e-16
Identities = 50/124 (40%), Positives = 68/124 (54%), Gaps = 9/124 (7%)
Frame = +2
Query: 293 EVPLSLFATNRRRLANKLK-----SGQ----IVVLQGGEDVNHYDTDVQYVFRQEAYFTW 445
EVP+ L A NR RL L+ SG+ +V+LQGGE+ Y TD +FRQE+YF +
Sbjct: 19 EVPMELHAGNRDRLVAALRAHLSASGRPLRGLVLLQGGEEQTRYCTDHLELFRQESYFAY 78
Query: 446 VCGVREPGCYFALDVSTGKSYSLCPDFLRSMKSGWANSMPVVTSKTYMQFDEVYYVDEIK 625
+ GVREPG Y A+D+ +G+S P P+ K + D V+YVDEI
Sbjct: 79 LFGVREPGFYGAIDIVSGQSILFSPRLPADYAVWMGEIKPLSYFKDRYKVDMVFYVDEIT 138
Query: 626 DVLK 637
VL+
Sbjct: 139 QVLQ 142
>12_02_0786 +
23139854-23139901,23140054-23140122,23140531-23140544,
23140603-23140675,23140875-23140979,23141817-23142080,
23142159-23142251,23142381-23142587,23143155-23143258,
23143436-23143502,23143576-23143683,23143943-23144033,
23144123-23144193,23144421-23144549,23144659-23144766
Length = 516
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/110 (20%), Positives = 46/110 (41%)
Frame = +2
Query: 323 RRRLANKLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVSTGK 502
R++L L + ++ E D V Y FRQ + ++ G +PG L TG
Sbjct: 123 RKKLLEVLPEKSLAIIASAEQQMMTDV-VPYSFRQNGDYLYITGCAQPGGVAVLSEETGL 181
Query: 503 SYSLCPDFLRSMKSGWANSMPVVTSKTYMQFDEVYYVDEIKDVLKSLDAR 652
+ PD + + V ++ + + D+ + + E++ +L + R
Sbjct: 182 CMFM-PDTSKEDVVWQGQTAGVEAAENFFKADKAFPLSEMQKILPEMIER 230
>03_02_0564 -
9477118-9477200,9477617-9477687,9477799-9477944,
9478051-9478128,9478284-9478388,9478647-9478769,
9479085-9479171,9479272-9479352,9479443-9479512,
9479604-9479662,9479763-9479831,9479912-9479962,
9480063-9480107,9480203-9480276,9480544-9480667,
9480773-9480940
Length = 477
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -1
Query: 559 GVCPSRLHTPQEVWAQRVRLACTNI*GKITTGFSNATNPCKIGFLSKYILYISIIVVHIF 380
GV + +VW + VR + + +IT +TN C I L+ + +S I+ H
Sbjct: 247 GVLTTDAQVSSDVWREMVRTSVSRSFNQITVDGDTSTNDCVIA-LASGLSGLSSILTHDS 305
Query: 379 TSLQ 368
T Q
Sbjct: 306 TEAQ 309
>08_02_0759 -
20851828-20851932,20852190-20852285,20853231-20853314,
20853411-20853481,20853568-20853655,20853745-20853936,
20854044-20854931
Length = 507
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 180 PTTVLSRIDIFSNHSKIKLPFIISSTWQRRGL 275
PT V + FS SK+ P I S WQR+ L
Sbjct: 424 PTVVADKDGFFSVKSKMLTPCITDSQWQRQEL 455
>03_05_1011 +
29658144-29658310,29659531-29659676,29660526-29660602,
29660682-29660804,29661817-29661924,29661995-29662075,
29662157-29662309,29662469-29662540,29662745-29662863,
29662958-29663071,29663176-29663221,29664865-29664933,
29665662-29665808,29666410-29666706
Length = 572
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +3
Query: 18 NC*KHDKYVNIKLLIDHLITSTLMLKIRNVIRR-RCLFSVRYFRPYQNSCNLSYIPTTVL 194
NC + Y++ + ++L L +K V RC + Y + +S + TT
Sbjct: 283 NCFSYRYYLSFLWMNNNLTREALKIKKGTVGEWIRCKTGLPYVQDVASSIKYHFDLTTGG 342
Query: 195 SRIDIFSNHSKIKLPFIISSTWQR 266
R +FS + LPF+ + W R
Sbjct: 343 YRALVFSGDHDLILPFLSTQAWIR 366
>06_01_0094 +
779097-779155,779882-781019,781732-782115,782842-783060
Length = 599
Score = 28.3 bits (60), Expect = 5.8
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = -2
Query: 504 DLPVLTSRAK*QPGSLTPQTHVK*ASCLNTYCTSVS*WFTSSPPCKTTICPLL--SLFAN 331
DLP+++S + S TP T +K + Y SVS SS ++ +L S A
Sbjct: 428 DLPLISSAVRWTASSRTPSTPIKFPAISRWYSVSVSTSINSSSNLFSSAAAVLRPSTAAC 487
Query: 330 LRRF--VANKDNGTSRVPGPIDHV 265
L ++ + +D G + +DHV
Sbjct: 488 LVQYSMILERDAGAAVGAAVLDHV 511
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,900,279
Number of Sequences: 37544
Number of extensions: 380996
Number of successful extensions: 728
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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