Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060193.seq
(664 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19954| Best HMM Match : AMP_N (HMM E-Value=1.6e-32) 82 3e-16
SB_27880| Best HMM Match : Activin_recp (HMM E-Value=5.1) 32 0.36
SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) 29 4.5
SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_4540| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_2358| Best HMM Match : Protamine_P2 (HMM E-Value=6.1) 28 7.8
>SB_19954| Best HMM Match : AMP_N (HMM E-Value=1.6e-32)
Length = 198
Score = 82.2 bits (194), Expect = 3e-16
Identities = 47/110 (42%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Frame = +2
Query: 308 LFATNRRRLANKLKS------GQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPG 469
+FATNRRRL +LK G IVVL GGE Y TD VFRQE++F W GV E
Sbjct: 1 MFATNRRRLCERLKKNEKVPKGAIVVLLGGEQNTRYCTDTDVVFRQESFFHWTFGVLEAD 60
Query: 470 CYFALDVSTGKSYSLCPDFLRSMKSGWANSMPVVTSKTYMQFDEVYYVDE 619
C+ A++V TGKS P + P K DEVY+V E
Sbjct: 61 CFGAVEVDTGKSILFIPKLPQEYAIWMGKIHPKEHYKEKYDVDEVYFVSE 110
>SB_27880| Best HMM Match : Activin_recp (HMM E-Value=5.1)
Length = 415
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +1
Query: 148 HIKTHVICLISPPQFYHVLIFFQTIQR*NCLSLYHRHGSDVVYGPWHS*SAVIFVRNKPT 327
H K CL +P F HV ++ + I C ++ +H +Y P S ++ +N P
Sbjct: 226 HQKHPYTCLYTPKTFLHVSVYTKNIPTRVC--IHRKHSYTCLYTPRTSLHVSVYTKNIPI 283
Query: 328 KI 333
++
Sbjct: 284 RV 285
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 148 HIKTHVICLISPPQFYHVLIFFQTIQR*NCLSLYHRHGSDVVYGPWHS*SAVIFVRNKPT 327
H K CL +P F HV + + I C ++ H +Y P S ++ +N PT
Sbjct: 71 HQKHAYKCLYTPRTFLHVSVHTKNIPTRVC--IHQNHPYTCLYTPKTSLHVSVYTKNIPT 128
Query: 328 KI 333
++
Sbjct: 129 RV 130
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +1
Query: 148 HIKTHVICLISPPQFYHVLIFFQTIQR*NCLSLYHRHGSDVVYGPWHS*SAVIFVRNKPT 327
H K L +P F HV ++ + I C+ + +H +Y P S ++ +N PT
Sbjct: 133 HQKHPYTRLYTPRTFLHVSVYTKNISTRVCI--HQKHPYTCLYTPRTSLQVSVYTKNIPT 190
Query: 328 KI 333
++
Sbjct: 191 RV 192
>SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 341 KLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFAL 484
+L +V++ G + TD+ Y FRQ F ++ G +EP L
Sbjct: 123 ELHDKHLVIIPGNPN-QFMSTDIPYPFRQNTDFLYLTGFQEPDAVLLL 169
>SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 347 KSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWV 448
K IV + G+D N+++ V +FRQ WV
Sbjct: 146 KVSPIVATESGDDENNFEQFVSAIFRQHTTQLWV 179
>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
Length = 843
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 325 SVCCEQR*RHFKSARAHRPRRCHV 254
S+ C QR + +RAHR +RCHV
Sbjct: 208 SITCPQR-KAVSRSRAHREKRCHV 230
>SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Frame = +2
Query: 371 QGGEDVNHYDTDVQYVFRQEAYFTWVC--GVREPGCYFALDVSTGKSYSLCPDFLRSMKS 544
Q + + HY V Y F + W+ G+ GC D+ G Y R
Sbjct: 210 QNSDPLGHYG-GVIYAFNERLVRLWIPSQGLNNTGCILLNDLWGGGKYEQLETRCRINVK 268
Query: 545 GWANSMPV 568
W N PV
Sbjct: 269 IWVNQFPV 276
>SB_4540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 521 DFLRSMKSGWANSMPVVTSKTYMQ 592
DF+R+ ++G N+MP V S YMQ
Sbjct: 10 DFVRTGRTGRRNAMPDVMSAQYMQ 33
>SB_2358| Best HMM Match : Protamine_P2 (HMM E-Value=6.1)
Length = 96
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 241 SLYHRHGSDVVYGPWHS*SAVIFVRNKPTKIS 336
S Y R+G+ V+ WHS S + R++ T+ S
Sbjct: 59 SQYTRYGTVTVHAVWHSHSTRVIARSQYTRYS 90
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,985,212
Number of Sequences: 59808
Number of extensions: 452341
Number of successful extensions: 906
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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