Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060193.seq
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...    73   1e-13
Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 46/124 (37%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
 Frame = +2

Query: 266 TWSMGPGTLEVPLSLFATNRRRLANKLKS----GQIVVLQGGEDVNHYDTDVQYV-FRQE 430
           T+ +   T +VP+ LF  NR RL + LKS      +V+LQGG + N Y+TD   + FRQE
Sbjct: 2   TFQLSEKTFKVPVDLFTENRHRLVDALKSKVPANSVVLLQGGVEKNRYNTDAADLPFRQE 61

Query: 431 AYFTWVCGVREPGCYFALDVSTGKSYSLCPDFLRSMKSGWANSMPVVTSKTYMQFDEVYY 610
           +YF W  GV E   Y A+DV +G   +L    L    + W      + ++ +  F E Y 
Sbjct: 62  SYFFWTFGVNESEFYGAIDVRSGGKTTLFAPRLDPSYAIWDGK---INNEQF--FKEKYA 116

Query: 611 VDEI 622
           VDE+
Sbjct: 117 VDEV 120


>Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical
           protein F40G12.1 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -1

Query: 625 FYLINIIDFIKLHICF 578
           F+++NII +I +HIC+
Sbjct: 178 FFIVNIIGYIGIHICY 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,761,909
Number of Sequences: 27780
Number of extensions: 351575
Number of successful extensions: 813
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)