Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060193.seq
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                25   0.85 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.5  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   6.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.0  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -1

Query: 295 FKSARAHRPRRCHVDDIMKGNF--IFE--WFEKISIRDKT 188
           + SA+ HRP   ++DD  KG +  +++  W + I+ R  T
Sbjct: 264 YLSAKGHRPIDDNIDDEFKGTYKTLYKQMWSQNITERPTT 303


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 204 QYVIKLWWGYKTDYMSF 154
           QY  ++W GYK D  SF
Sbjct: 631 QYNSRIWGGYKFDKRSF 647


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 204 QYVIKLWWGYKTDYMSF 154
           QY  ++W GYK D  SF
Sbjct: 631 QYNSRIWGGYKFDKRSF 647


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 341 YLLIFVGLLRTKITALQ 291
           YLL+F+GL    +T +Q
Sbjct: 247 YLLVFIGLQSLSLTNIQ 263


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -2

Query: 219 GLKKYQYVIKLWWGYK 172
           G+ + + ++ +WW YK
Sbjct: 60  GIHRKKVLLSVWWDYK 75


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -2

Query: 219 GLKKYQYVIKLWWGYK 172
           G+ + + ++ +WW YK
Sbjct: 182 GIHRKKVLLSVWWDYK 197


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 192 KLWWGYKTDYMSFD 151
           K WW  K   +SFD
Sbjct: 365 KWWWNMKISNLSFD 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,991
Number of Sequences: 438
Number of extensions: 4722
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)