Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060193.seq
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29490.1 68417.m04208 Xaa-Pro dipeptidase, putative / prolida...    75   4e-14
At1g09300.1 68414.m01041 metallopeptidase M24 family protein sim...    30   1.6  
At4g35880.1 68417.m05095 aspartyl protease family protein contai...    28   4.8  
At2g04280.1 68415.m00420 expressed protein                             28   4.8  

>At4g29490.1 68417.m04208 Xaa-Pro dipeptidase, putative / prolidase,
           putative / imidodipeptidase, putative similar to
           SP|P12955 Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro
           dipeptidase) (Proline dipeptidase) (Prolidase)
           (Imidodipeptidase) {Homo sapiens}; contains Pfam
           profiles PF00557: metallopeptidase family M24, PF05195:
           Aminopeptidase P, N-terminal domain
          Length = 333

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 47/123 (38%), Positives = 68/123 (55%), Gaps = 11/123 (8%)
 Frame = +2

Query: 296 VPLSLFATNRRRLANKLKS---------GQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWV 448
           +P+ L A NR++L   ++             V+LQGGE+ N Y TD   +FRQE+YF ++
Sbjct: 9   IPMELHAGNRKKLLESIRRQLSSSNRSLDGFVLLQGGEEKNRYCTDHTELFRQESYFAYL 68

Query: 449 CGVREPGCYFALDVSTGKSYSLCPDFLRSMKSGWANSMPVVT--SKTYMQFDEVYYVDEI 622
            GVREP  Y A+D+ +GKS    P  L    + W   +  ++   +TYM  D V+YVDEI
Sbjct: 69  FGVREPDFYGAIDIGSGKSILFIPR-LPDDYAVWLGEIKPLSHFKETYM-VDMVFYVDEI 126

Query: 623 KDV 631
             V
Sbjct: 127 IQV 129


>At1g09300.1 68414.m01041 metallopeptidase M24 family protein
           similar to SP|P15034 Xaa-Pro aminopeptidase (EC
           3.4.11.9) (X-Pro aminopeptidase) (Aminopeptidase P II)
           (Aminoacylproline aminopeptidase) {Escherichia coli};
           contains Pfam profiles PF00557: metallopeptidase family
           M24, PF05195: Aminopeptidase P, N-terminal domain
          Length = 493

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 1/123 (0%)
 Frame = +2

Query: 278 GPGTLEVPLSLFATNRRRLANKLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGV 457
           G  T  + +  +   R++L   L    + ++     V      V Y FRQ+A + ++ G 
Sbjct: 46  GEVTPGIRIEEYIGRRKKLVELLPENSLAIISSAP-VKMMTDVVPYTFRQDADYLYLTGC 104

Query: 458 REPGCYFALDVSTGKSYSLCPDFLRSMKSGWANSMP-VVTSKTYMQFDEVYYVDEIKDVL 634
           ++PG    L    G    +     + +   W   +  V  +    + D+ Y + ++ ++L
Sbjct: 105 QQPGGVAVLSDERGLCMFMPESTPKDI--AWEGEVAGVDAASEVFKADQAYPISKLPEIL 162

Query: 635 KSL 643
             +
Sbjct: 163 SDM 165


>At4g35880.1 68417.m05095 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 524

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 380 EDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVSTG 499
           EDV H  T+ +   R EAY T+ CG  + G +  +    G
Sbjct: 207 EDVMHLTTEDKNPERVEAYVTFGCGQVQSGSFLDIAAPNG 246


>At2g04280.1 68415.m00420 expressed protein
          Length = 568

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 209 FFKPFKDKIAFHYIIDMAATW 271
           FF P KDK A H++ D    W
Sbjct: 485 FFNPLKDKYATHFLYDYKDLW 505


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,651,045
Number of Sequences: 28952
Number of extensions: 318332
Number of successful extensions: 659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)