Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060192.seq
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 31 0.19
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 29 0.59
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 27 1.8
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 27 2.4
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 27 2.4
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz... 27 2.4
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 27 3.1
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 27 3.1
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 25 7.2
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy... 25 7.2
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 30.7 bits (66), Expect = 0.19
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 365 SLSKCPLSRLGSIMCWLT*VFLHSGPSCILLDSAICPM 478
SLS+CP ++ C L + +S PS +D + CP+
Sbjct: 612 SLSECPKLNSINVACNLLSFYEYSNPSATFIDFSFCPL 649
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 29.1 bits (62), Expect = 0.59
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 650 IAPSTSYAERTPHQRPCGTVESEESAGHPSKYGEEAE 540
++ ST Y+ R+P GT E++ + H + G +E
Sbjct: 5 VSSSTDYSRRSPSSSSIGTNETDHTGFHEKRQGASSE 41
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 6 VSGGQVILGH*CTANCTSITIKLSNCGVLKWILPVRMVVEKLEARL 143
++ G +ILG N + + L NC L +P+ + +KL RL
Sbjct: 106 ITPGSLILGQIAQINTLDLAVSLPNC--LTGYVPITNISDKLSDRL 149
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 124 KSWRRV*PSGFYSKASCDRQGGM 192
K WRR P GFY+K GG+
Sbjct: 14 KQWRRDHPFGFYAKPCKSSDGGL 36
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 2.4
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +1
Query: 355 GEYLFEQMSSVKTRKHYVLADLGFSAFWAFLYFVGFCYLS-NAWGKTEKPPIERRTTCRA 531
G Y + ++ R Y L +GF FW YF G S A KPP RR
Sbjct: 111 GFYPLSETRTMHVRCRYRLLGVGFDNFWLVHYFQGSETDSIPANISVAKPPHLRR---YP 167
Query: 532 LLHSASSPYLLGWP 573
L +SP+LL P
Sbjct: 168 LPDVKTSPFLLQEP 181
>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 261 LPTESVRQPLDDMQPITITLNSQHTAL 181
LP E + +P+D ++P T TLN T L
Sbjct: 332 LPDEDIYKPVDKVEPGTRTLNISGTEL 358
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 185 AVCWLFSVIVMGCISSKGWRTDSVGRTIASIMMTQMHVTMVSG 313
A WL ++ G IS + T + TIA + + HV + G
Sbjct: 549 AASWLAKILEPGPISLNPFETSFLNTTIAGMYSNKEHVGVTDG 591
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 472 TNSRIQQNTRRPRMQKNLSQPTHNAS 395
+ SR N RR KN + PTH+AS
Sbjct: 77 SRSRSSNNKRRTSFGKNGASPTHSAS 102
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 524 HVVRRSIGGFSVLPQALDK*QNPTKYK 444
H +RR GG S+ P A+ + +KY+
Sbjct: 619 HQIRRYTGGISISPSAVTNNSDVSKYE 645
>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/34 (23%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 265 HCVYNDDTNACNY-GVGISVIAFIASVAFIVGEY 363
+C+ ++ ++A N G+ +S++ + ++AF++ Y
Sbjct: 180 YCIVHNKSSAANIVGIVLSIVVTLGTLAFLIVRY 213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,687
Number of Sequences: 5004
Number of extensions: 52067
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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