Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060192.seq
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1584 + 34601927-34602144,34603324-34603510,34604239-346044... 34 0.086
03_05_1129 - 30595580-30595771,30596119-30597162 30 1.4
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 28 5.6
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 28 7.5
07_01_0973 - 8193002-8193261,8193388-8193485,8194117-8194401,819... 28 7.5
04_04_0069 + 22506885-22508354 28 7.5
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633... 28 7.5
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117... 27 9.9
>04_04_1584 +
34601927-34602144,34603324-34603510,34604239-34604496,
34604866-34604965,34608523-34608639,34608704-34608804,
34609035-34610141
Length = 695
Score = 34.3 bits (75), Expect = 0.086
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +1
Query: 484 GKTEKPPIERRTTCRALLHSASSPYLLGWPALSSLSTVPHGR*CGVRSAYEVXGA 648
G+ E PP RR T LL S+SSP L + + +P+ C VR+ Y A
Sbjct: 150 GRRETPPQPRRETAAVLLSSSSSPIHLP-RRDDAAAAIPNPHVCSVRACYATRAA 203
>03_05_1129 - 30595580-30595771,30596119-30597162
Length = 411
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 653 PIAPSTSYAERTPHQRPCGTVESE-ESAGHPSKYGEEAECNSALH 522
P +PS +++ R P G++E E SA P G EA C LH
Sbjct: 173 PWSPSGAWSLRDVRGSPTGSIEVELASAAPPEASGVEARCVVTLH 217
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 472 SNAWGKTEKPPIERRTTCRALLHSASSPYLLGWPALSSLST 594
S+ + T P +T C ++SASSP L G +S ST
Sbjct: 499 SSPFAPTISNPFPTQTNCSQFVNSASSPSLFGTINQNSFST 539
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 265 HCVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSVKTRKHYVLADLG 423
HC ++ + N+G +S F+ SV YLF K++KHY + +G
Sbjct: 683 HCKFSSFGGSFNFGHEVS--NFVVSVFC---RYLFHLSHPSKSKKHYFFSSIG 730
>07_01_0973 -
8193002-8193261,8193388-8193485,8194117-8194401,
8195559-8195773,8196549-8197058
Length = 455
Score = 27.9 bits (59), Expect = 7.5
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Frame = -1
Query: 650 IAPSTSYAERTPHQRPCGTVESEESAGHPSKYGEEAECNSALHVVRRSIGGFSVLPQALD 471
++PS + A R Q+P + P++ + E + V +S S LP + D
Sbjct: 68 LSPSPATAPRAARQKPLPSPSPPPPPPAPAEAARQKEVERRVDAVVQSKPSVSPLPSSAD 127
Query: 470 K*QNP---TKYKKAQNAEKPKSANT*CFLVLTEDICSKRYSP--TIKATEAMNAMTDIP 309
+ P + + A+ AE+ + N FL T +Y P +++ + +AM P
Sbjct: 128 VKRPPAAESAPEPARAAEEEAAGNLERFLSSTTPSVPVQYLPKTSMRGWRSGDAMNSSP 186
>04_04_0069 + 22506885-22508354
Length = 489
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 496 KPPIERRTTCRA--LLHSASSPYLLGWPALSSLSTVPH-GR*CGV 621
+P RR C L+ A S GWPA +++ VPH GR C V
Sbjct: 384 RPAWRRRPRCEEELLVGVARSSAHKGWPAGDAIAGVPHVGRACVV 428
>03_02_0884 +
12160453-12160518,12160598-12160696,12163223-12163357,
12163841-12163891,12164070-12164693,12164779-12164952,
12165047-12165272,12165368-12165459,12165551-12165649,
12165743-12165791,12165878-12165931,12166235-12166290,
12166367-12166438,12166520-12166615,12167069-12167418,
12167508-12167679,12167777-12167875,12167959-12168090,
12168185-12168288,12168369-12168401,12168744-12168930,
12169016-12169024
Length = 992
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 265 HCVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSVKTRKHYVLADLG 423
HC ++ + N+G +S F+ SV YLF K++KHY + +G
Sbjct: 758 HCKFSSFGGSFNFGHEVS--NFVVSVFC---RYLFHLSHPSKSKKHYFFSSIG 805
>05_05_0202 -
23211342-23211385,23211493-23211579,23211666-23211779,
23211886-23212111,23212222-23212401,23212511-23212654,
23212818-23212979,23213093-23213296,23214109-23214156,
23214601-23214846
Length = 484
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 343 AFIVGEYLFEQMSSVKTRKHYVLADLGFSAF 435
AF+VG YL E+++ +K KH ++ D+ F
Sbjct: 384 AFVVGSYLKERLNKLK-EKHDIIGDVRGKGF 413
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,602,725
Number of Sequences: 37544
Number of extensions: 364561
Number of successful extensions: 965
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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