Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060192.seq
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52187| Best HMM Match : HNF-1A_C (HMM E-Value=1.8)                  28   5.8  
SB_56923| Best HMM Match : PT (HMM E-Value=0.95)                       28   7.6  
SB_45885| Best HMM Match : efhand (HMM E-Value=5.9e-05)                28   7.6  
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_52187| Best HMM Match : HNF-1A_C (HMM E-Value=1.8)
          Length = 193

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 262 PSHRISTPALG*YAAHYNHAEQPTYRPDDHMR 167
           PS RIS P       HY+  ++P+ +P  H R
Sbjct: 112 PSQRISLPVSTNAYLHYHQTKKPSTKPPHHTR 143


>SB_56923| Best HMM Match : PT (HMM E-Value=0.95)
          Length = 441

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -1

Query: 653 PIAPSTSYAERTPHQRPCGTVESEESAGHPSKY 555
           P     SY  R+P    C       SAGHPS +
Sbjct: 319 PCGSQMSYPARSPPHVQCDPFSPTSSAGHPSPF 351


>SB_45885| Best HMM Match : efhand (HMM E-Value=5.9e-05)
          Length = 611

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -2

Query: 262 PSHRISTPALG*YAAHYNHAEQPTYRPDDHMRPLNKSLRVKRASSFSTTIRTGSIHFSTP 83
           PS RI  P L     HY+  ++P+ +P  H R  +  + +   ++  TT +T   +  T 
Sbjct: 105 PSQRIFLPVLTNAYLHYHLTKKPSAKPPRHTRKHSTKVGI---TTRCTTNKTPQANTGTI 161

Query: 82  QLDNLI 65
            L+  I
Sbjct: 162 DLEEFI 167


>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 447 QEGPECRKT*VSQHIMLPSLDRGHLLKEIFPDNKSHGGNE 328
           +E P CRK  VS+  + P  +   L+ +I+PD + +  ++
Sbjct: 20  KECPTCRKKLVSKRSLRPDPNFDALIAKIYPDREEYEAHQ 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,133,501
Number of Sequences: 59808
Number of extensions: 414466
Number of successful extensions: 1300
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)