Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060192.seq
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40417-10|AAA81418.2| 247|Caenorhabditis elegans Synaptogyrin f... 50 1e-06
AF079373-1|AAC27798.1| 247|Caenorhabditis elegans synaptogyrin ... 50 1e-06
Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical pr... 29 3.8
AC006712-4|ABD63214.1| 166|Caenorhabditis elegans Hypothetical ... 28 5.0
U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channe... 28 6.7
U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel... 28 6.7
U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel... 28 6.7
U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel... 28 6.7
U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel... 28 6.7
AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltag... 28 6.7
AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calciu... 28 6.7
AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calciu... 28 6.7
AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calciu... 28 6.7
AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-depen... 28 6.7
AF077539-1|AAK84580.2| 550|Caenorhabditis elegans Hypothetical ... 27 8.8
>U40417-10|AAA81418.2| 247|Caenorhabditis elegans Synaptogyrin
family protein 1 protein.
Length = 247
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/65 (32%), Positives = 37/65 (56%)
Frame = +1
Query: 268 CVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSVKTRKHYVLADLGFSAFWAFL 447
C+Y ++ C++ + A ++ IV + +Q+SSV TR+ VLADL SA + +
Sbjct: 60 CLYGRSSSTCSFATAVGFFAVCGAIVLIVLDAKMDQISSVPTRRRAVLADLVVSAIFTAI 119
Query: 448 YFVGF 462
+ +GF
Sbjct: 120 FLIGF 124
>AF079373-1|AAC27798.1| 247|Caenorhabditis elegans synaptogyrin
homolog protein.
Length = 247
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/65 (32%), Positives = 37/65 (56%)
Frame = +1
Query: 268 CVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSVKTRKHYVLADLGFSAFWAFL 447
C+Y ++ C++ + A ++ IV + +Q+SSV TR+ VLADL SA + +
Sbjct: 60 CLYGRSSSTCSFATAVGFFAVCGAIVLIVLDAKMDQISSVPTRRRAVLADLVVSAIFTAI 119
Query: 448 YFVGF 462
+ +GF
Sbjct: 120 FLIGF 124
>Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical
protein C08B6.9 protein.
Length = 343
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +3
Query: 495 EAANRTA--NNM--QGAIAFCFFSIFAWVACAFFAFNGSAWALMRRS 623
E+ RTA NN+ + I F +I+ W+ AFF F+G A+ + +S
Sbjct: 132 ESYERTAKVNNICRKHHIRFISGAIYGWIGYAFFDFDGHAYLVKAKS 178
>AC006712-4|ABD63214.1| 166|Caenorhabditis elegans Hypothetical
protein Y119C1B.12 protein.
Length = 166
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 426 FCILGLLVFCWILLFVQCLGQ 488
+CILGL+VF +LL V C+ +
Sbjct: 143 YCILGLIVFAILLLVVCCVAR 163
>U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform f protein.
Length = 1418
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 310 RHHSYMHLCHHYRRNGPSH 254
R HS+ LCHH+ N P H
Sbjct: 1016 RVHSWSGLCHHFNPNCPVH 1034
>U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform c protein.
Length = 1852
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 310 RHHSYMHLCHHYRRNGPSH 254
R HS+ LCHH+ N P H
Sbjct: 1016 RVHSWSGLCHHFNPNCPVH 1034
>U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform a protein.
Length = 1837
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 310 RHHSYMHLCHHYRRNGPSH 254
R HS+ LCHH+ N P H
Sbjct: 1016 RVHSWSGLCHHFNPNCPVH 1034
>U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform d protein.
Length = 1885
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 310 RHHSYMHLCHHYRRNGPSH 254
R HS+ LCHH+ N P H
Sbjct: 1064 RVHSWSGLCHHFNPNCPVH 1082
>U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform e protein.
Length = 1844
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 310 RHHSYMHLCHHYRRNGPSH 254
R HS+ LCHH+ N P H
Sbjct: 1023 RVHSWSGLCHHFNPNCPVH 1041
>AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltage
sensitive calciumchannel alpha1 subunit isoform D
protein.
Length = 1844
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 310 RHHSYMHLCHHYRRNGPSH 254
R HS+ LCHH+ N P H
Sbjct: 1023 RVHSWSGLCHHFNPNCPVH 1041
>AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform C protein.
Length = 1852
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 310 RHHSYMHLCHHYRRNGPSH 254
R HS+ LCHH+ N P H
Sbjct: 1016 RVHSWSGLCHHFNPNCPVH 1034
>AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform B protein.
Length = 1885
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 310 RHHSYMHLCHHYRRNGPSH 254
R HS+ LCHH+ N P H
Sbjct: 1064 RVHSWSGLCHHFNPNCPVH 1082
>AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform A protein.
Length = 1837
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 310 RHHSYMHLCHHYRRNGPSH 254
R HS+ LCHH+ N P H
Sbjct: 1016 RVHSWSGLCHHFNPNCPVH 1034
>AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-dependent
calcium channelalpha13 subunit protein.
Length = 1837
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 310 RHHSYMHLCHHYRRNGPSH 254
R HS+ LCHH+ N P H
Sbjct: 1016 RVHSWSGLCHHFNPNCPVH 1034
>AF077539-1|AAK84580.2| 550|Caenorhabditis elegans Hypothetical
protein T25D3.4 protein.
Length = 550
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 223 AAHYNHAEQPTYRPDDHMRPLNKSLRVKRASS 128
AAH N+++ P PDD + P + L K S
Sbjct: 11 AAHSNNSQLPKVNPDDRLSPNTRVLITKLEDS 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,611,830
Number of Sequences: 27780
Number of extensions: 307362
Number of successful extensions: 888
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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