Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060192.seq
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    29   0.030
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    29   0.030
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   4.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.0  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 396 PSLDRGHLLKEIFPDNKSHGGNECNDR 316
           P  + G  LK+I PD  S G N+CN++
Sbjct: 52  PCTNEGRELKKILPDALSTGCNKCNEK 78


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 396 PSLDRGHLLKEIFPDNKSHGGNECNDR 316
           P  + G  LK+I PD  S G N+CN++
Sbjct: 52  PCTNEGRELKKILPDALSTGCNKCNEK 78


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
 Frame = -2

Query: 613 ISAHAEPLK--AKKAQATQANMEKKQNAIAPCMLFAVRLAASQFCPKHWT 470
           ++AH + ++  AKK         + QN  A C L  V L         WT
Sbjct: 243 VAAHEKNMREQAKKMNVASLRSSENQNTSAECKLAKVALMTISLWFMAWT 292


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 97  GYFRCVWWWKSW 132
           GY+ C WW   W
Sbjct: 484 GYYPCCWWKICW 495


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 97  GYFRCVWWWKSW 132
           GY+ C WW   W
Sbjct: 537 GYYPCCWWKICW 548


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 181  DDHMRPLNKSLRVKRASSFSTTIRT 107
            +DH RPL++ +     S +ST  RT
Sbjct: 1324 EDHRRPLSEHIYSSIDSDYSTLERT 1348


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/40 (30%), Positives = 14/40 (35%)
 Frame = -2

Query: 589 KAKKAQATQANMEKKQNAIAPCMLFAVRLAASQFCPKHWT 470
           +AKK         + QN  A C L  V L         WT
Sbjct: 3   QAKKMNVASLRSSENQNTSAECKLAKVALMTISLWFMAWT 42


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 250  ISTPALG*YAAHYNHAEQPTYRPDDHMRPLNKSLRVKRASSFSTTIRT--GSI 98
            I TP+ G     +   EQ +   +++   +NK    KR +S +T+++   GSI
Sbjct: 849  IGTPSTGMMYKPFLIPEQTSISHENNQPTMNKCSDRKRPASQATSVKAEPGSI 901


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/56 (21%), Positives = 22/56 (39%)
 Frame = -2

Query: 631  MRSERRISAHAEPLKAKKAQATQANMEKKQNAIAPCMLFAVRLAASQFCPKHWTNS 464
            +R ER +     P +    +++        + IAP  L A     ++   KH T +
Sbjct: 907  IRPERNVRQSMMPTRYSTTKSSAVTATNASSMIAPVALTAATCDQNKAVKKHITTT 962


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,011
Number of Sequences: 438
Number of extensions: 3452
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)