Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060192.seq
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15480.1 68416.m01963 expressed protein                             35   0.054
At5g18670.1 68418.m02216 beta-amylase, putative (BMY3) / 1,4-alp...    30   1.2  
At4g27435.1 68417.m03943 expressed protein                             30   1.2  
At1g23420.1 68414.m02934 inner no outer protein (INO) identical ...    29   2.7  
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ...    28   4.7  
At2g03060.1 68415.m00259 MADS-box family protein                       28   4.7  
At1g51850.1 68414.m05845 leucine-rich repeat protein kinase, put...    28   4.7  
At5g48040.1 68418.m05936 hypothetical protein                          28   6.2  

>At3g15480.1 68416.m01963 expressed protein
          Length = 175

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = +1

Query: 262 DHCVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSVKTRKHYVLADLGFSAFWA 441
           D+CVY  D  A +YG G  V+ F++ V  +     F    S+        A + F   W 
Sbjct: 42  DYCVYGTDI-ATSYGAGAFVLLFVSQVLIMAASRCFCCGKSLNPGGSRACAIILFLICWV 100

Query: 442 FLYFVGFCYLS 474
           F      C L+
Sbjct: 101 FFLIAEMCLLA 111


>At5g18670.1 68418.m02216 beta-amylase, putative (BMY3) /
           1,4-alpha-D-glucan maltohydrolase, putative almost
           identical to beta-amylase BMY3 GI:15149457 from
           [Arabidopsis thaliana]; identical to cDNA putative
           beta-amylase BMY3 (BMY3) GI:15149456
          Length = 536

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 454 VGFCYLSNAWGKTEKPPIERRTTCRALLHSASSPYLLGWPALSSLSTV 597
           V FC  S+ W +       R   C A++   +SP+L   P   SL +V
Sbjct: 40  VSFCNQSSKWKEIAIRCSSRSVKCEAIVSDDASPFLKSTPKSKSLESV 87


>At4g27435.1 68417.m03943 expressed protein
          Length = 173

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/73 (24%), Positives = 31/73 (42%)
 Frame = +1

Query: 262 DHCVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSVKTRKHYVLADLGFSAFWA 441
           ++CVY+ D  A  YGVG  + +  + +  ++    F     +K      LA + F   W 
Sbjct: 42  NYCVYDSD-RATGYGVGAFLFSVASQILIMLVSRCFCCGKPLKPGGSRALALILFIVSWM 100

Query: 442 FLYFVGFCYLSNA 480
           F      C L+ +
Sbjct: 101 FFLIAEICLLAGS 113


>At1g23420.1 68414.m02934 inner no outer protein (INO) identical to
           INNER NO OUTER (INO) [Arabidopsis thaliana] GI:6684816
          Length = 231

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 607 AHAEPLKAKKAQATQANMEKKQNAIAPCMLF 515
           AH  P   K+A + Q   E+  NAI PC +F
Sbjct: 174 AHFPPAHNKRAASDQCFCEEDNNAILPCNVF 204


>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
           XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 1012

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 238 LAY*FCGKDHCVYNDDTNACNYGVGISVI 324
           ++Y  C K+H  YN +T+ C YG+   +I
Sbjct: 211 MSYIRCNKNHPGYNPNTHHCLYGLDADLI 239


>At2g03060.1 68415.m00259 MADS-box family protein 
          Length = 337

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 262 DHCVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSVKTRKHY 405
           D   YND+TN   +G   S +    S   +  EYLF Q++  K  + +
Sbjct: 293 DSSAYNDNTNQTRFGSSSSSLPCSIS---MFDEYLFSQVTKTKLSQRF 337


>At1g51850.1 68414.m05845 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376
          Length = 865

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 229 IQGLAY*FCGKDHCVYNDDTNACNYGVGISVIAFIASVAFIVG 357
           ++G  +  C  D CV   +       V + V+A IAS+A ++G
Sbjct: 460 VEGNPHLLCTADSCVKKGEDGHKKKSVIVPVVASIASIAVLIG 502


>At5g48040.1 68418.m05936 hypothetical protein
          Length = 422

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 16  VKLYWVIDARLTALVSQSSYLIAVC 90
           VKL WV D  L A+V +  +L AVC
Sbjct: 35  VKLKWVKDRELDAVVVREKHLRAVC 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,808,183
Number of Sequences: 28952
Number of extensions: 283665
Number of successful extensions: 804
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)