Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060191.seq
         (565 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.19 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.19 
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   1.8  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    22   4.2  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   5.5  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    21   9.6  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    21   9.6  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 438 PYEAQAFFRELDSPXDFPKDY 500
           P EA+ FFREL++P   P++Y
Sbjct: 304 PEEAETFFRELEAPC--PRNY 322


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 438 PYEAQAFFRELDSPXDFPKDY 500
           P EA+ FFREL++P   P++Y
Sbjct: 304 PEEAETFFRELEAPC--PRNY 322


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 329 TIGILCLFGIGSYWN 373
           TIG LC++ I + WN
Sbjct: 51  TIGCLCIWSIFNKWN 65


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 480 EDCQVL*KRPGLHKAFRLE 424
           EDC +L + P LH   R E
Sbjct: 70  EDCYMLFREPQLHNLCRSE 88


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 305 WRFRTLSCTIGILCLFG 355
           W F  L   I  LCLFG
Sbjct: 322 WSFALLITRIVCLCLFG 338


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 480 EDCQVL*KRPGLHKAFR 430
           EDC +L + P LH   R
Sbjct: 70  EDCYMLFREPQLHNLCR 86


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 480 EDCQVL*KRPGLHKAFR 430
           EDC +L + P LH   R
Sbjct: 70  EDCYMLFREPQLHNLCR 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,710
Number of Sequences: 336
Number of extensions: 2768
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)