Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060191.seq
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    34   0.017
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    27   1.4  
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    26   4.4  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   7.7  

>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 33.9 bits (74), Expect = 0.017
 Identities = 24/77 (31%), Positives = 34/77 (44%)
 Frame = -3

Query: 371 SSSSRYQINIEFQLCMTRFGNAIFISFLLVDNNTSVITTAICILSLASGSTAFLSTTNVV 192
           S +S  Q+     +C+      IF+SF   DN    ITT       A  S +   T+NV+
Sbjct: 139 SRASFSQVASFMGVCVWSVPIGIFVSFTAADNTLPTITTPSSSSPDAYSSGSSRRTSNVL 198

Query: 191 ELAVLHLGVIITFSSTS 141
             A   LG+ +  S TS
Sbjct: 199 RQAYKKLGIFVERSLTS 215


>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +1

Query: 163 MTPKCKTANSTTLVVERKAVEPEASDKIHIAVVITL-VLLSTSKKLMKMAFPNLVMHNWN 339
           M+PK K+ N T  +V +        +K H  ++  L +++ T  KL K+   N+V+ +  
Sbjct: 1   MSPKSKSTNKTYTIVIKLGTSSICDEKTHEPLISNLSLIVETVVKLRKLGH-NVVLVSSG 59

Query: 340 SMFIWYREL 366
            + +  R L
Sbjct: 60  GIAMGLRRL 68


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 405 WFKPQMTPNERPYEAQAFFRELDSPXDFP 491
           W    M P + PY    FF  +  P D+P
Sbjct: 33  WQATIMGPADSPYAGGVFFLSIHFPTDYP 61


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 233 ASGSTAFLSTTNVVELAVLHLGVIITFSSTSAMV 132
           A GS  F+S    + LA  H GV  TF +   +V
Sbjct: 444 AEGSNNFISDIFFLNLAFHHYGVNATFKALEQLV 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,591
Number of Sequences: 5004
Number of extensions: 43172
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)