Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060191.seq
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1012 + 23295976-23296264,23296475-23296548,23296972-232969...    27   7.8  

>07_03_1012 +
           23295976-23296264,23296475-23296548,23296972-23296996,
           23297486-23297568,23297653-23297685,23298322-23298469,
           23298625-23298722
          Length = 249

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 396 LRFWFKPQMTPNERPYEAQAFFRELDSPXDFP 491
           L  W    + P   PYE   FF ++  P D+P
Sbjct: 85  LYHWLSTIIGPQGSPYEGGIFFLDIVFPIDYP 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,088,728
Number of Sequences: 37544
Number of extensions: 257917
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)