Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060191.seq
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)                    31   0.65 
SB_15628| Best HMM Match : p450 (HMM E-Value=1.20512e-43)              28   4.6  
SB_49274| Best HMM Match : p450 (HMM E-Value=0)                        28   6.1  
SB_50017| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)                27   8.0  
SB_2389| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.0  

>SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)
          Length = 1345

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 305 IFISFLLVDNNTSVITTAICILSLASGS-TAFLSTTNVVELAVLHLGVIITFSSTSAMV 132
           I I F  +   T+++TT I I +  + S T  ++TT  V   ++   +I T   T+A +
Sbjct: 465 IIILFFSIITTTNIVTTMITITTTTTSSPTISINTTTTVTTTIITTTIITTIIITTATI 523


>SB_15628| Best HMM Match : p450 (HMM E-Value=1.20512e-43)
          Length = 440

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 214 KAVEPEASDKIHIAVVITLVLLSTSKKLMKMAFPNLVMHNWNSMFIWYRELLE 372
           KA     S      V++TL+ L   K  +  AFP+LV+ N+  +    + ++E
Sbjct: 220 KAARKSLSTSTTRRVIVTLLFLMPFKNYIFKAFPSLVIGNFEGLLEMTKMIVE 272


>SB_49274| Best HMM Match : p450 (HMM E-Value=0)
          Length = 568

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 273 IIINKQETYENGVSEPCHAQLEFYVYLVSGATGTHTREAR 392
           I + +++TYEN   E CHA      +L S  T +H  E +
Sbjct: 310 IYLERRQTYENEEQESCHAS-AITKHLSSFMTTSHMEEGQ 348


>SB_50017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 366 TGTHTREARALRFWFKPQMTPNERPYEAQAFFRELDS 476
           T  H R+ R L+  ++P  T +  P   Q   R +DS
Sbjct: 311 TAFHQRDVRELKIAYRPPHTTSSDPRTFQLILRAIDS 347


>SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)
          Length = 561

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = +3

Query: 201 GS*KESCRTRSK*QNTYSGGDHTGIIINKQETYENGVSEPCHAQLEFYVYLVSGATGTHT 380
           G  K S  T    Q+    GD    + +  E YEN   + CH   E   Y +S     H+
Sbjct: 375 GGRKSSIETTDNDQSNIENGDDDSGVESPNEAYEN---DSCHND-ENQTYYISSNHKYHS 430

Query: 381 REARALRFWF 410
            ++R  R  F
Sbjct: 431 SKSRRKRTAF 440


>SB_2389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -2

Query: 429 LESSEV*TRTLEHVLHVCGFQ*-----LPIPNKHRIPIVHDKVRKRHFHKF 292
           L+++   T +  +V+HV GF+      +    KHR P   DK  K H HKF
Sbjct: 284 LKAARPSTPSGNYVMHVRGFKRTVYCDMDTAGKHREPEHRDKETKPHRHKF 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,576,751
Number of Sequences: 59808
Number of extensions: 316513
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)