Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060191.seq
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125448-3|AAD12809.1|  575|Caenorhabditis elegans Hypothetical ...    31   0.57 
AF125448-2|AAL32228.1|  582|Caenorhabditis elegans Hypothetical ...    31   0.57 
AF125448-1|AAD12814.1|  578|Caenorhabditis elegans Hypothetical ...    31   0.57 
AL031627-23|CAA20946.2|  174|Caenorhabditis elegans Hypothetical...    29   1.7  
AL031627-4|CAA20957.1|  230|Caenorhabditis elegans Hypothetical ...    29   1.7  
AF036702-14|AAB88378.2|  396|Caenorhabditis elegans Hypothetical...    29   1.7  
AF036702-13|AAB88379.2|  648|Caenorhabditis elegans Hypothetical...    29   1.7  
Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z68337-1|CAA92745.1|  147|Caenorhabditis elegans Hypothetical pr...    28   5.3  
S56051-1|AAB25489.2|  147|Caenorhabditis elegans ubiquitin-conju...    28   5.3  
Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical p...    27   7.0  
Z93389-1|CAB07668.1|  346|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF125448-3|AAD12809.1|  575|Caenorhabditis elegans Hypothetical
           protein H14E04.2a protein.
          Length = 575

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = +3

Query: 255 GGDHTGIIINKQETYENGVSEPCHAQLEFYVYLVSGATGTHTREARALRFWFKPQMTPNE 434
           GG + G+IIN+ E   N         L F V+L +       +E R+L F  +  +  + 
Sbjct: 41  GGSYAGLIINRYEEKSN-FESTADVSLSFSVHLSNKNHQKQVQEKRSLFFKLRKSVELDV 99

Query: 435 RPYEAQAFFRELDSPXDFPKDY 500
                  FF+ L S  + P DY
Sbjct: 100 GRLVVHKFFKNLLS--NLPGDY 119


>AF125448-2|AAL32228.1|  582|Caenorhabditis elegans Hypothetical
           protein H14E04.2c protein.
          Length = 582

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = +3

Query: 255 GGDHTGIIINKQETYENGVSEPCHAQLEFYVYLVSGATGTHTREARALRFWFKPQMTPNE 434
           GG + G+IIN+ E   N         L F V+L +       +E R+L F  +  +  + 
Sbjct: 41  GGSYAGLIINRYEEKSN-FESTADVSLSFSVHLSNKNHQKQVQEKRSLFFKLRKSVELDV 99

Query: 435 RPYEAQAFFRELDSPXDFPKDY 500
                  FF+ L S  + P DY
Sbjct: 100 GRLVVHKFFKNLLS--NLPGDY 119


>AF125448-1|AAD12814.1|  578|Caenorhabditis elegans Hypothetical
           protein H14E04.2b protein.
          Length = 578

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = +3

Query: 255 GGDHTGIIINKQETYENGV--SEPCHAQLEFYVYLVSGATGTHTREARALRFWFKPQMTP 428
           GG + G+IIN+ E   N V         L F V+L +       +E R+L F  +  +  
Sbjct: 41  GGSYAGLIINRYEEKSNFVFSESTADVSLSFSVHLSNKNHQKQVQEKRSLFFKLRKSVEL 100

Query: 429 NERPYEAQAFFRELDSPXDFPKDY 500
           +        FF+ L S  + P DY
Sbjct: 101 DVGRLVVHKFFKNLLS--NLPGDY 122


>AL031627-23|CAA20946.2|  174|Caenorhabditis elegans Hypothetical
           protein Y102A5C.9 protein.
          Length = 174

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +1

Query: 268 LVLLSTSKKLMKMAFPNLVMHNWNSMFIWYRELLE---PTHVKHV 393
           L +L  + +L   +   +V HN N++  W+ EL++    TH KHV
Sbjct: 90  LSVLMKNSELQLDSLDIIVYHNHNTIVKWFEELVQSKNQTHCKHV 134


>AL031627-4|CAA20957.1|  230|Caenorhabditis elegans Hypothetical
           protein Y102A5C.13 protein.
          Length = 230

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +1

Query: 268 LVLLSTSKKLMKMAFPNLVMHNWNSMFIWYRELLE---PTHVKHV 393
           L +L  + +L   +   +V HN N++  W+ EL++    TH KHV
Sbjct: 28  LSVLMKNSELQLDSLDIIVYHNHNTIVKWFEELVQSKNQTHCKHV 72


>AF036702-14|AAB88378.2|  396|Caenorhabditis elegans Hypothetical
           protein F33D4.6a protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 339 FYVYLVSGATGTHTREARALRFWFKPQMTPNERP 440
           F +  +  ATG   REA+A +   KPQ TP + P
Sbjct: 160 FSISRLISATGNAIREAQAAQAAQKPQQTPQQEP 193


>AF036702-13|AAB88379.2|  648|Caenorhabditis elegans Hypothetical
           protein F33D4.6b protein.
          Length = 648

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 339 FYVYLVSGATGTHTREARALRFWFKPQMTPNERP 440
           F +  +  ATG   REA+A +   KPQ TP + P
Sbjct: 160 FSISRLISATGNAIREAQAAQAAQKPQQTPQQEP 193


>Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical
           protein F08A10.2 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = -3

Query: 305 IFISFLLVDNNTSVITTAICILSLA--SGSTAFLSTTN-VVELAVLHLGVIITFSSTSAM 135
           IF+  + + +NT +ITTA+ IL L     S+   S  N ++ L  L+  +I+ F S  ++
Sbjct: 76  IFLILVFISSNTKIITTAVPILILIVYLMSSVITSIQNSLLFLLALYRFIIVFFPSWKSV 135

Query: 134 VT 129
            +
Sbjct: 136 AS 137


>Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical
           protein F53B7.2 protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -3

Query: 164 IITFSSTSAMVTA*IYCFQYISRCSLLFHFMLWLNALDF*L*VXIFIFLSFRLV 3
           I  F   + ++   ++C   + RCSL+ HF+L L+  D  L V  F  L F ++
Sbjct: 91  IAIFGFITNVINVIVFCDPEM-RCSLVNHFLLVLSISDLVLLVCNFFMLIFPVI 143


>Z68337-1|CAA92745.1|  147|Caenorhabditis elegans Hypothetical
           protein M7.1 protein.
          Length = 147

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 405 WFKPQMTPNERPYEAQAFFRELDSPXDFP 491
           W    M P E PY+   FF  +  P D+P
Sbjct: 33  WQATIMGPPESPYQGGVFFLTIHFPTDYP 61


>S56051-1|AAB25489.2|  147|Caenorhabditis elegans
           ubiquitin-conjugating enzyme protein.
          Length = 147

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 405 WFKPQMTPNERPYEAQAFFRELDSPXDFP 491
           W    M P E PY+   FF  +  P D+P
Sbjct: 33  WQATIMGPPESPYQGGVFFLTIHFPTDYP 61


>Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical
           protein F40F9.2 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -3

Query: 383 TCVGSSSSRYQINIEFQLCMTRFGNAIFISFLLVDNNTSVITTAICILSLASGSTAFLS 207
           +C G+   ++ +NI   L +     A+   F+    N   +   +CI ++ SGS    S
Sbjct: 85  SCCGNLRRQFPVNI-ILLTIFTLSAAVMTMFVTACYNVQSVLICLCITTVCSGSVIIFS 142


>Z93389-1|CAB07668.1|  346|Caenorhabditis elegans Hypothetical
           protein T13F3.1 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 338 FQLCMTRFGNAIFISFLLVDNNTSVITTAICILSL 234
           +  CM  FG   F  +L +  +T +I   +CIL L
Sbjct: 102 YGFCMGIFGIHFFYRYLAIYGHTEMIRKLVCILFL 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,697,906
Number of Sequences: 27780
Number of extensions: 243394
Number of successful extensions: 642
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)