Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060191.seq
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   4.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   4.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   6.5  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 279 INKQETYENGVSEPCHAQLEFYVYLVSGA 365
           + +Q  YEN VS  C+A  +    LV+ A
Sbjct: 221 MEQQGNYENAVSHICNATNKQLFQLVAWA 249


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 279 INKQETYENGVSEPCHAQLEFYVYLVSGA 365
           + +Q  YEN VS  C+A  +    LV+ A
Sbjct: 221 MEQQGNYENAVSHICNATNKQLFQLVAWA 249


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = +1

Query: 187 NSTTLVVERKAVEP----EASDKIHIAVVITLVLLSTSKKLMKMAFPNLVMHNWNSM 345
           N T  + E   VEP      SD+    ++++  L S   + +++    + M NW  M
Sbjct: 263 NRTNNIFELVTVEPILTERPSDRQRNEILLSDELDSVDDRTLRLKGQMIYMDNWKMM 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,811
Number of Sequences: 438
Number of extensions: 2878
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)