Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060191.seq
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26820.1 68418.m03200 ferroportin-related low similarity to f...    29   1.6  
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    28   3.7  
At3g13620.1 68416.m01714 amino acid permease family protein weak...    28   5.0  
At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative ...    28   5.0  
At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10) id...    27   6.5  
At2g26750.1 68415.m03208 epoxide hydrolase, putative strong simi...    27   6.5  
At2g47390.1 68415.m05915 expressed protein                             27   8.7  

>At5g26820.1 68418.m03200 ferroportin-related low similarity to
           ferroportin1 [Danio rerio] GI:7109245
          Length = 598

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -3

Query: 275 NTSVITTAICILSLASGSTAFLSTTNVVELAVLHLGVI-ITFSSTSAMVTA*IYCFQYIS 99
           N SVI     + ++   +  FLS   V  + +L  G + + F ++   V   +YC   +S
Sbjct: 429 NPSVIGGFSGLCAVMGVAATFLSANLVKRVGILKAGAVGLFFQASLLAVAVAVYCSSSLS 488

Query: 98  RCSLLFHFM 72
             S LF F+
Sbjct: 489 HKSPLFFFL 497


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
           similarity to flagelliform silk protein [Nephila
           clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -2

Query: 198 CCGI-GRFTFRCHYHLFFNF 142
           CCG+ GRF FRC +  +F F
Sbjct: 29  CCGLCGRFWFRCWFCCWFQF 48


>At3g13620.1 68416.m01714 amino acid permease family protein weak
           similarity to SP|Q9WTR6 Cystine/glutamate transporter
           (Amino acid transport system xc-) {Mus musculus};
           contains Pfam profile PF00324: Amino acid permease
          Length = 478

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 247 HIAVVITLVLLSTSKKLMKMAFPNLVMHNWNSM 345
           + AVV+ LV LS    +  MA P +  H W S+
Sbjct: 170 YAAVVLGLVSLSPFLVMSAMAIPKIKPHRWGSL 202


>At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative
           strong similarity to SP|P35133 Ubiquitin-conjugating
           enzyme E2-17 kDa 10 (EC 6.3.2.19) (Ubiquitin- protein
           ligase 10) (Ubiquitin carrier protein 10) {Arabidopsis
           thaliana}; contains Pfam profile PF00179:
           Ubiquitin-conjugating enzyme
          Length = 148

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 405 WFKPQMTPNERPYEAQAFFRELDSPXDFP 491
           W    M PNE PY    F   +  P D+P
Sbjct: 33  WQATIMGPNESPYSGGVFLVNIHFPPDYP 61


>At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10)
           identical to ubiquitin-conjugating enzyme COP10
           [Arabidopsis thaliana] GI:20065779; contains Pfam
           profile PF00179: Ubiquitin-conjugating enzyme
          Length = 182

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 396 LRFWFKPQMTPNERPYEAQAFFRELDSPXDFP 491
           L  W    + P+  PYE   FF ++  P D+P
Sbjct: 65  LYHWIATIIGPSGTPYEGGIFFLDIIFPSDYP 96


>At2g26750.1 68415.m03208 epoxide hydrolase, putative strong
           similarity to ATsEH [Arabidopsis thaliana] GI:1109600
          Length = 320

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 268 LVLLSTSKKLMKMAFPNLVMHNWNSMFIWYRELLEPTHVK 387
           + ++ST  K  K  F  +V H+W ++  WY  L  P  VK
Sbjct: 83  VAVISTLIKEDKKVF--VVGHDWGALIAWYLCLFRPDKVK 120


>At2g47390.1 68415.m05915 expressed protein
          Length = 961

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -3

Query: 317 FGNAIFISFLLVDNNTSVITT 255
           F NAIF SF+ +DN+T +++T
Sbjct: 255 FLNAIFESFVWIDNSTLLVST 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,893,567
Number of Sequences: 28952
Number of extensions: 221679
Number of successful extensions: 482
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)