Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060190.seq
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   115   5e-27
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    28   1.3  
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    28   1.3  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    27   3.0  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   4.0  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   7.0  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   7.0  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   7.0  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  115 bits (277), Expect = 5e-27
 Identities = 63/128 (49%), Positives = 81/128 (63%)
 Frame = +1

Query: 61  ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRCVGHHESTGDARRSGE 240
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA    E     +       +        +
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 241 NFTSRVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVXDAVENIDI 420
                VH GILAR   SD++D+  Q  E I +VVCNLYPF +T++KP+VT+ +AVE IDI
Sbjct: 63  TLHPAVHGGILARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDI 122

Query: 421 GGVTLLRA 444
           GGVTLLRA
Sbjct: 123 GGVTLLRA 130



 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 450 KNHDRVTVVCXPADYDAVVKK 512
           KNH RVT++  PADY     K
Sbjct: 133 KNHARVTILSDPADYATFTDK 153


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 431 VTPPMSMFSTASXTVTS-GLDTVWTNGYRLQTT 336
           V PP+S F +AS  V   G   +W NGYR   T
Sbjct: 155 VRPPLSSFQSASDIVRRYGFTALW-NGYRYHLT 186


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +1

Query: 211 STGDARRSGENFTSRVHAGILARLSDSDQEDMKRQKYEMI 330
           + G   R+G+ +T R  +G+L  + DSD +D +++K  ++
Sbjct: 184 AAGYPSRTGQEYTDRF-SGLLQAIEDSDLKDGQKRKLHVL 222


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 270 DPSMYPGCKVFTRPPSISGALVMSDTS 190
           DP ++   K+F RPP   G L+    S
Sbjct: 517 DPQVFKNLKIFKRPPKKEGDLIFDRLS 543


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 208 ESTGDARRSGENFTSRVHAGILARLSDSDQEDMKR 312
           + TG A  SGENFT+     IL   +D   E  ++
Sbjct: 677 QETGYAINSGENFTTAARHAILDLTNDEGIEQSRK 711


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 18  VVLEQTEHGVKWKTSSSQRFRQDGS 92
           V ++  +HG++W T   Q F +  S
Sbjct: 641 VAIDYRDHGIRWVTLGEQNFGEGSS 665


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 488 GRVTDDGDPVVVLGXARRRVTPPMSMFSTASXTVTSGLDTVWTNGYRL 345
           G+ T  G   V +    RRV P +S+  ++  TV   +DT ++   +L
Sbjct: 461 GQSTKPGADPVSVEEELRRVIPMISLLRSSGITVPISIDTYYSKVAKL 508


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 243  LYIQGTCWDLSSII 284
            LY  G+CW+LS II
Sbjct: 1456 LYTNGSCWELSVII 1469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,997
Number of Sequences: 5004
Number of extensions: 44975
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)