Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060190.seq
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 71 6e-13
04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019 33 0.19
10_08_0048 - 14441540-14441620,14442044-14442111,14442275-144424... 32 0.34
11_06_0257 + 21746643-21748091 32 0.45
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 31 1.0
03_01_0112 + 902459-902770,903275-903280 30 1.4
11_02_0149 - 8801675-8804332 29 3.1
05_07_0183 + 28251548-28252009,28252172-28252594 29 3.1
03_02_0505 + 8981856-8982879,8983014-8983129,8985407-8985994,898... 29 3.1
11_06_0349 + 22565405-22566279,22567774-22569772,22570360-225704... 29 4.1
08_01_0621 - 5426210-5427787 28 7.2
11_06_0347 + 22555087-22555943,22556638-22558783 27 9.6
11_06_0337 - 22454281-22456399,22458520-22459388 27 9.6
07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840... 27 9.6
03_01_0113 + 905535-905840,906601-906812,906929-907196,907314-90... 27 9.6
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 71.3 bits (167), Expect = 6e-13
Identities = 46/133 (34%), Positives = 66/133 (49%), Gaps = 3/133 (2%)
Frame = +1
Query: 55 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRC--VGHHESTGDAR 228
K AL+S+SDKT L L L G +I++GGTA+ + ++ + + D R
Sbjct: 46 KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105
Query: 229 RSGENFTSRVHAGILARLSDSDQ-EDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVXDAV 405
+ VH GILAR + + VVV NLYPF V+ ++ D +
Sbjct: 106 V--KTLHPSVHGGILARRDQEHHLKALNEHGIGTFDVVVVNLYPFYNKVTSGVISFEDGI 163
Query: 406 ENIDIGGVTLLRA 444
ENIDIGG T++RA
Sbjct: 164 ENIDIGGPTMIRA 176
>04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019
Length = 486
Score = 33.1 bits (72), Expect = 0.19
Identities = 22/75 (29%), Positives = 36/75 (48%)
Frame = +3
Query: 39 HGVKWKTSSSQRFRQDGSTLVSKEPVGMWPAVDCQWRYRHGRFGTPASQFKMCRTSREHR 218
HG ++KT+++ G ++ PA C+W RH RF A + +C ++ H
Sbjct: 344 HGDEYKTAAALTSTGAGMRAAARRCSYSCPAEGCRWNRRHPRF--QALKSVVC--AKNHY 399
Query: 219 RCSEVG*KLYIQGTC 263
R S K+Y+ G C
Sbjct: 400 RRSHCP-KMYVCGRC 413
>10_08_0048 -
14441540-14441620,14442044-14442111,14442275-14442493,
14442506-14444508,14447541-14448410,14448533-14448576,
14449920-14450093
Length = 1152
Score = 32.3 bits (70), Expect = 0.34
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 85 TGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRCVGHHESTGDAR-RSGE--NFTSR 255
T L A + S C + + TA S RR H VG + GD + R+ + T
Sbjct: 147 TSTLQTASATSPCSGRTTGAAATAVPFSRRRRHGGGGVGRGPADGDGQCRTHRPWDATRP 206
Query: 256 VHAGILARLSDSDQED 303
V G++ L+D + +D
Sbjct: 207 VGLGLVGALNDDEDDD 222
>11_06_0257 + 21746643-21748091
Length = 482
Score = 31.9 bits (69), Expect = 0.45
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 223 HLRCSRDVRHILNCEAGVPKRPWRYRHWQST 131
HL C++ R+++N +G WR+R W S+
Sbjct: 300 HLPCAQPCRYLVNTPSGELLHVWRFRQWVSS 330
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 244 SFHPTSEHLRCSR-DVRHILNCEAGVPKRPWRYRHWQST 131
S HP S H S+ D I +C A V WR RH +T
Sbjct: 791 SHHPFSAHAHYSQPDFPTIASCRAAVASSKWRRRHPSTT 829
>03_01_0112 + 902459-902770,903275-903280
Length = 105
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 232 TSEHLRCSRDVRHILNCEAGVPKRPWRYR 146
T+ LR RD RH+ CE+GVPK R++
Sbjct: 58 TATRLRL-RDGRHLAYCESGVPKEEARFK 85
>11_02_0149 - 8801675-8804332
Length = 885
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 28 SKQNMASNGKLALLSVSDKTGLLSLAKSLSECGLQL 135
S QN+ S G +ALL+ ++ T + S + S +E G QL
Sbjct: 553 SCQNVTSMGVMALLATAEPTSMPSSSTSSNETGSQL 588
>05_07_0183 + 28251548-28252009,28252172-28252594
Length = 294
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +1
Query: 145 GGTATGASERRPHSSRCVGHHESTGDARRSGENFTSRVHAGILARLSDSDQ 297
GG +G +RR ++ CV E G +GE H G+ R + ++
Sbjct: 92 GGLISGLRDRRSNALTCVSMQEGDGQGEEAGEGDVGAGH-GVAGRRPELEE 141
>03_02_0505 +
8981856-8982879,8983014-8983129,8985407-8985994,
8986091-8986192
Length = 609
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +3
Query: 87 GSTLVSKEPVGMWPAVDCQWRYR----HGRFGTPASQFKMCR 200
G + ++PVG WPA C YR RFG AS +M R
Sbjct: 129 GHVWLDEQPVGPWPAATCP-PYRVSADASRFGDRASASRMAR 169
>11_06_0349 +
22565405-22566279,22567774-22569772,22570360-22570478,
22570835-22571117
Length = 1091
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +1
Query: 55 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRCVGHH 207
KL D LLS + LS C L+ +A + TG E SS+ H
Sbjct: 773 KLVKFQAKDDELLLSAIEHLSSCSLKFLAIDDSFTGFLESSLSSSQAAPEH 823
>08_01_0621 - 5426210-5427787
Length = 525
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 503 YSIVVGRVTDDGDPVVVLGXARRRVTPP 420
YS+ GR+ DDGD + + RR V+ P
Sbjct: 140 YSLAEGRMCDDGDVRLPMACRRRYVSSP 167
>11_06_0347 + 22555087-22555943,22556638-22558783
Length = 1000
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 55 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRCVGHH 207
+L D LLS + LS C L+ +A + TG +R SS+ H
Sbjct: 766 RLVNFQAKDDELLLSAIEHLSSCSLKFLAIDDSFTGFLDRSLSSSQAQPEH 816
>11_06_0337 - 22454281-22456399,22458520-22459388
Length = 995
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +1
Query: 25 LSKQNMASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRCVGH 204
L+ N + ++ SV D LLS + LS C L+ + TG R SS+
Sbjct: 751 LTNLNKLAIYRIVKFSVKDDELLLSAIEHLSSCSLKFLVVDDNFTGFLYRSLSSSQAPPE 810
Query: 205 H 207
H
Sbjct: 811 H 811
>07_03_0602 +
19881998-19882217,19882303-19882496,19883719-19884039,
19885016-19885244,19885554-19885653,19886413-19886539,
19886603-19886780,19886859-19886917,19887082-19887568,
19887682-19887836,19887930-19888100,19888181-19888270,
19888714-19888872,19888940-19889223,19889435-19889498
Length = 945
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 169 PKRPWRYRHWQSTAGHIPTGS 107
P PW++ HWQ+ G + + S
Sbjct: 22 PVHPWQWHHWQNLLGLLSSSS 42
>03_01_0113 +
905535-905840,906601-906812,906929-907196,907314-907595
Length = 355
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -1
Query: 208 RDVRHILNCEAGVPKRPWRYRHWQSTAGHIPTGSLLTRVDPS 83
RD RH+ E+GV K RY+ H TGS L V PS
Sbjct: 63 RDGRHLAYAESGVRKEDARYK---VVFSHGFTGSRLDSVRPS 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,685,186
Number of Sequences: 37544
Number of extensions: 335520
Number of successful extensions: 1136
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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