Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060190.seq
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             121   4e-28
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                      83   2e-16
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_52990| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_1691| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         28   5.6  
SB_26612| Best HMM Match : NC (HMM E-Value=6.7)                        28   7.4  
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   7.4  
SB_20098| Best HMM Match : Phage_fiber (HMM E-Value=4.5)               23   9.2  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      27   9.8  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  121 bits (292), Expect = 4e-28
 Identities = 75/143 (52%), Positives = 90/143 (62%), Gaps = 5/143 (3%)
 Frame = +1

Query: 31  KQNMAS--NGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRCVGH 204
           K+ MA+   G LALLSVS+K GL+  AK L + G +L+ASGGTA  A        R V  
Sbjct: 24  KKKMAAVGAGSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTAN-AIRNAGIPVRDVS- 81

Query: 205 HESTGDARRSG---ENFTSRVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVS 375
            E TG     G   +     VH GILAR+S+ D+ DM +Q +E I VVVCNLYPFV TV+
Sbjct: 82  -EITGAPEMLGGRVKTLHPAVHGGILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVA 140

Query: 376 KPDVTVXDAVENIDIGGVTLLRA 444
           K  V V +AVE IDIGGVTLLRA
Sbjct: 141 KEGVIVSEAVEQIDIGGVTLLRA 163



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +3

Query: 450 KNHDRVTVVCXPADYDAVVKKSKRTNIIRRLWAQGRD*P*RRSLILRTMNLAISDYF 620
           KNH+RVTVVC P DY+ V+ +         L    +    +      + ++AISDYF
Sbjct: 166 KNHERVTVVCDPEDYNKVLSEMTENETCDTLPDTRKTLALKAFSHTASYDMAISDYF 222


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 40/59 (67%), Positives = 47/59 (79%)
 Frame = +1

Query: 268 ILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVXDAVENIDIGGVTLLRA 444
           ILAR+S+ D+ DM +Q +E I VVVCNLYPFV TV+K  V V +AVE IDIGGVTLLRA
Sbjct: 2   ILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 60



 Score = 32.7 bits (71), Expect = 0.26
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +3

Query: 450 KNHDRVTVVCXPADYD 497
           KNH+RVTVVC P DY+
Sbjct: 63  KNHERVTVVCDPEDYN 78


>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +1

Query: 418 IGGVTLLRAXPRTTTGSPSSVTRPTTML*SRNQREQTSSDDFGHKAEISPEGVHS 582
           IGG        R  TG+P+ + RP  +   R QR Q+ +    +   IS  GV S
Sbjct: 562 IGGQRAPPRSKRAVTGNPAMMNRPNLVGRGRPQRPQSHAPSMYNGKSISTTGVDS 616


>SB_52990| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 782

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 12  YTVVLEQTEHGVKWKTSSSQRFRQDGSTLVSKEPVG 119
           YT+ LE T  G KWK  S+ +  +    +  KE +G
Sbjct: 416 YTIALESTSVGAKWKLKSTPQDSERFVQMAMKELLG 451


>SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +2

Query: 152 PPRALRNAGLTVQDVSDIT-----RAPEMLGGRVKTLHPGYMLGS 271
           PP+ L+   L ++  +D T     RA +  GG+ +TL PGY +GS
Sbjct: 677 PPKRLQ-VSLLMRPDNDFTAVRLVRAIKQRGGKKETLEPGYSIGS 720


>SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 286 DSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVXDAVENIDIGGVT 432
           +SD+ED + + YE+I          ++ +   D+     ++ I IGG T
Sbjct: 5   ESDKEDSQEEPYEIIETPGARQQDLLRDLMSMDLGNRTTIQQIGIGGAT 53


>SB_1691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 205 HESTGDARRSGENFTSRVHAGILARLSDS 291
           H   GD + +GEN TSRV  G+L  LS S
Sbjct: 64  HRDHGDLK-AGENATSRVFRGLLRLLSGS 91


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 145 GGTATGASERRPHSSRCVGHHESTGDARRSGENFTSRVHA 264
           GG+  G+      + RC G  +S  + R +G N TS  HA
Sbjct: 516 GGSIPGSGTIWMDNVRCNGTEKSLSECRHNGWNVTSCTHA 555


>SB_26612| Best HMM Match : NC (HMM E-Value=6.7)
          Length = 451

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -3

Query: 500 SIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASXT---VTSGLDTVWTNGYRLQTTTL 330
           S+   RVT   D V        R+TP M    TAS T   +T  +DTV+T        TL
Sbjct: 76  SVTFYRVTLVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTL 135

Query: 329 II 324
           ++
Sbjct: 136 VM 137



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -3

Query: 500 SIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASXT---VTSGLDTVWTNGYRLQTTTL 330
           S+   R+T   D V        R+TP M    TAS T   +T  +DTV+T        TL
Sbjct: 144 SVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTL 203

Query: 329 II 324
           ++
Sbjct: 204 VM 205


>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 645

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 48  KWKTSSSQRFRQDGSTLVSKEP 113
           +W T  ++R+R+DGS ++  EP
Sbjct: 334 QWHTVVAERYRRDGSLILDSEP 355


>SB_20098| Best HMM Match : Phage_fiber (HMM E-Value=4.5)
          Length = 195

 Score = 23.4 bits (48), Expect(2) = 9.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 328 SSRTSDVSCLPGQSRIIELRSQHVPWM*SFHPTSEH 221
           +S    +SC P  +   E  +   PW  +F PT+ H
Sbjct: 75  NSHEHGISC-PRTAMNTEFLAHEQPWARNFWPTNSH 109



 Score = 22.6 bits (46), Expect(2) = 9.2
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = -1

Query: 244 SFHPTSEHLRCSRDVRHILNCEAGVPKRPWRYRHWQSTA 128
           +F PT+ H       R  +N E    ++PW    W + +
Sbjct: 124 NFWPTNSHEHGISCPRTAMNTEFLAHEQPWARNFWPTNS 162


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +1

Query: 340  VCNLYPFVQTVSKPDVTVXDAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTTM 498
            +C+   +V     P V      +   I  VT     PRTT   P+S + P TM
Sbjct: 1446 ICSFVKYVAQFGAPPVQPLSGPQRASISRVT-----PRTTPDKPTSSSTPVTM 1493


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 364  QTVSKPDVTVXDAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTT 495
            +T   P+ T        +I GV+   A P TT+G P + T P T
Sbjct: 2571 ETTFVPETTAVPETTGSEITGVSETTAVPETTSG-PMTTTGPET 2613


>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2516

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 346  YRPPRLSSRTSDVSCLPGQSRIIELRSQHVPWM*SFHPTS 227
            Y  P    R +D+ C  G S I + +  +VP+  S +PT+
Sbjct: 1043 YHEPHAVGRWNDMPCYSGNSYIWKGKKAYVPFGGSVNPTT 1082


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,982,446
Number of Sequences: 59808
Number of extensions: 379324
Number of successful extensions: 1031
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)