Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060190.seq
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...   115   3e-26
Z14148-2|CAA78521.1|  679|Caenorhabditis elegans hypothetical po...    29   3.7  
Z14148-1|CAA78520.1|  854|Caenorhabditis elegans hypothetical po...    29   3.7  
Z14146-2|CAA78517.1|  679|Caenorhabditis elegans hypothetical pr...    29   3.7  
Z14146-1|CAA78516.1|  854|Caenorhabditis elegans unc-33 protein.       29   3.7  
AC006737-1|AAM97965.1|  854|Caenorhabditis elegans Uncoordinated...    29   3.7  
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    27   8.6  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    27   8.6  

>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score =  115 bits (276), Expect = 3e-26
 Identities = 66/137 (48%), Positives = 83/137 (60%), Gaps = 2/137 (1%)
 Frame = +1

Query: 40  MASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERR--PHSSRCVGHHES 213
           M     LA++SVSDKTGL+ LA  L   GL LIASGGTA    ++    H    V     
Sbjct: 1   MTDGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPE 60

Query: 214 TGDARRSGENFTSRVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTV 393
               R   +     VH GILAR ++SD++D+++     +SVVVCNLYPF +TV   D +V
Sbjct: 61  MLGGRV--KTLHPAVHGGILARDTESDRKDLEKHNISFVSVVVCNLYPFKKTVQSKDCSV 118

Query: 394 XDAVENIDIGGVTLLRA 444
            +AVENIDIGGVTLLRA
Sbjct: 119 EEAVENIDIGGVTLLRA 135



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +3

Query: 450 KNHDRVTVVCXPADYDAVVKKSK 518
           KNH+RV+V+C PADYD ++ + K
Sbjct: 138 KNHERVSVICDPADYDHIISELK 160



 Score = 31.9 bits (69), Expect = 0.40
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +2

Query: 512 IKENKHHQTTLGTRQRLALKAFTHTSDYEPRHIGLL 619
           I E K   TT   RQ LALKAF HT+ Y+    G +
Sbjct: 156 ISELKSGGTTRERRQLLALKAFEHTTSYDESISGFM 191


>Z14148-2|CAA78521.1|  679|Caenorhabditis elegans hypothetical
           polypeptide II protein.
          Length = 679

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 184 SSRCVGHHESTGDARRSGENFTSRVHAGILARLSDSD 294
           SS   GH    GD+ R+GE  T R ++G +   +D +
Sbjct: 98  SSSKKGHPSEDGDSTRNGETPTDRRNSGAIEETADGE 134


>Z14148-1|CAA78520.1|  854|Caenorhabditis elegans hypothetical
           polypeptide I protein.
          Length = 854

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 184 SSRCVGHHESTGDARRSGENFTSRVHAGILARLSDSD 294
           SS   GH    GD+ R+GE  T R ++G +   +D +
Sbjct: 273 SSSKKGHPSEDGDSTRNGETPTDRRNSGAIEETADGE 309


>Z14146-2|CAA78517.1|  679|Caenorhabditis elegans hypothetical
           protein.
          Length = 679

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 184 SSRCVGHHESTGDARRSGENFTSRVHAGILARLSDSD 294
           SS   GH    GD+ R+GE  T R ++G +   +D +
Sbjct: 98  SSSKKGHPSEDGDSTRNGETPTDRRNSGAIEETADGE 134


>Z14146-1|CAA78516.1|  854|Caenorhabditis elegans unc-33 protein.
          Length = 854

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 184 SSRCVGHHESTGDARRSGENFTSRVHAGILARLSDSD 294
           SS   GH    GD+ R+GE  T R ++G +   +D +
Sbjct: 273 SSSKKGHPSEDGDSTRNGETPTDRRNSGAIEETADGE 309


>AC006737-1|AAM97965.1|  854|Caenorhabditis elegans Uncoordinated
           protein 33 protein.
          Length = 854

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 184 SSRCVGHHESTGDARRSGENFTSRVHAGILARLSDSD 294
           SS   GH    GD+ R+GE  T R ++G +   +D +
Sbjct: 273 SSSKKGHPSEDGDSTRNGETPTDRRNSGAIEETADGE 309


>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical protein
            C25D7.3 protein.
          Length = 2150

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 256  VHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVXDA 402
            V   I   +SD++  D+ R+K E  S++  N+    Q +++ DVT   A
Sbjct: 991  VTENIRQEMSDAEMRDLMRKKREQYSMLFPNVPQPFQPLNRFDVTAPGA 1039


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger protein
            protein.
          Length = 2150

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 256  VHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVXDA 402
            V   I   +SD++  D+ R+K E  S++  N+    Q +++ DVT   A
Sbjct: 991  VTENIRQEMSDAEMRDLMRKKREQYSMLFPNVPQPFQPLNRFDVTAPGA 1039


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,562,254
Number of Sequences: 27780
Number of extensions: 266994
Number of successful extensions: 799
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)