Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060190.seq
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    27   0.15 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +2

Query: 137 LPVAVPPRALRNAGLTVQDVSDIT---RAPEMLGGRVKTLH 250
           +P   PP A +N  +   D S +     AP MLGGR  T +
Sbjct: 312 MPCTQPPSAPQNLTVNFVDQSTVFLSWNAPHMLGGRTDTTY 352


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 202 HHESTGDARRSGENFTSRVHAGIL 273
           HH  T   R SG   T  + AG+L
Sbjct: 539 HHRDTPVVRASGRELTIILLAGVL 562


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 202 HHESTGDARRSGENFTSRVHAGIL 273
           HH  T   R SG   T  + AG+L
Sbjct: 629 HHRDTPVVRASGRELTIILLAGVL 652


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 125 PHSDRLFANESRPVLSETLRRASFPFDAMFCLLK 24
           P+ D L+   +    S T+    FPFD   C++K
Sbjct: 135 PNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCIMK 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,820
Number of Sequences: 438
Number of extensions: 3043
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)