Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060189.seq
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.09 |||mitochondrial translation termination factor|Schi...    27   1.9  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.5  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    27   3.4  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    27   3.4  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   5.9  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   7.8  

>SPBC1709.09 |||mitochondrial translation termination
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = +3

Query: 198 YETDSRRMVCTNFNETWQSIAKYTASDAYASTTLISAVVRNTTTFKSSITERAEKCLTAL 377
           Y  DSR  +     E  + IAK   S A+ S     A     T FK++I        +AL
Sbjct: 181 YAKDSREQLSAMRTELKKEIAKNKKSKAWTSDDCYKAEAEMQTAFKNAINLLDSGLKSAL 240

Query: 378 K 380
           K
Sbjct: 241 K 241


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 126  CSAXRVCEINEHGDAMCNCIKDC 194
            C+A R+C++ E       C+ DC
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -1

Query: 330 TWWYCGP--RH*SELSRHKHRWRYTS 259
           T+WY  P  RH  E  +  H W Y+S
Sbjct: 44  TYWYPPPPPRHHKEHKKSHHHWEYSS 69


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 297 LISAVVRNTTTFKSSITERAEKCLTALKARCLTSPV 404
           LI  + +N T F   + E+   CL  LK + + SP+
Sbjct: 82  LIELLQKNHTIFPFELCEKIVLCLVLLKNKTVISPI 117


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 92  NQHGRPLPESPLQRXTCLRNQRTRRRH 172
           NQ+ +  P SP+Q     +N R R RH
Sbjct: 323 NQYLQSNPSSPIQWSLISKNMRNRHRH 349


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = +3

Query: 204 TDSRRMVCTNFNETWQSIAKYTASDAYASTTLISAVVRNTTTFKSSITERAEK 362
           +D   + C N++ +W+ +  +     Y  +  I+   ++T TF SS  +   K
Sbjct: 117 SDDMTIKCFNWDMSWKCVQTFEGHSRYVMSLAINP--KDTNTFASSCLDGTVK 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,987
Number of Sequences: 5004
Number of extensions: 54973
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)