Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060189.seq
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0976 + 8226194-8226473,8227116-8227291,8227366-8227486,822... 30 1.5
12_01_0308 + 2318010-2318708,2318802-2318890,2319006-2319105,231... 30 2.0
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962... 30 2.0
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 3.5
03_02_0368 + 7840665-7841975 29 3.5
02_02_0497 + 10961079-10963824,10964182-10964282,10964759-109648... 29 3.5
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 29 4.6
08_02_0739 + 20584264-20584626,20586943-20587011,20587696-205880... 29 4.6
02_04_0576 + 24009297-24009980,24010062-24010376 29 4.6
11_06_0344 + 22540436-22540737,22541304-22543545 28 6.0
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 28 8.0
03_05_0469 + 24640925-24641081,24641292-24641644,24641870-246420... 28 8.0
>07_01_0976 +
8226194-8226473,8227116-8227291,8227366-8227486,
8228684-8228757,8229269-8229332,8229969-8230039,
8230279-8230368,8230491-8230661,8231668-8231739
Length = 372
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 220 WCAQTSTKPGNRLRSIPPAMLMPRQL*SVPWSAIPPRSNRVLRNVP 357
W A +T P +R PP PR L +P S+ PP SN +P
Sbjct: 6 WLAAAATTP---VRRSPPLPATPRALLRLPASSFPPWSNCAKSGLP 48
>12_01_0308 +
2318010-2318708,2318802-2318890,2319006-2319105,
2319349-2319606,2319875-2319955,2319956-2320125,
2320358-2320628
Length = 555
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 460 DPSLPEDGAGGGIKPHGRWANAAIWKWCDLDAQTN 564
D + EDG GGGI G W +W C T+
Sbjct: 148 DAAASEDGGGGGIHDTGSW-GVELWNCCSAAPPTH 181
>08_01_0961 -
9622444-9622928,9623011-9623102,9623862-9624002,
9624460-9624506,9624581-9624639,9624780-9624940,
9625021-9625196,9625284-9625355,9625820-9625879,
9625997-9626191
Length = 495
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +3
Query: 279 AYASTTLISAV--VRNTTTFKSSITERA-EKCLTALKARCLTSPVACGTGFLTSCATWL 446
+Y S L+S V R K+S++ + C L C S CG F T CA +L
Sbjct: 290 SYLSLPLMSIVKIARECGWRKTSVSSVCHDPCAICLDTECTVSAEGCGHEFCTKCALYL 348
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 273 SDAYASTTLISAVVRNTTTFKSSITERAEK-CLTALKARCLTSPVACGTG 419
S + S +I A+ RN + + S+ E + C++ K + LT+PVA G G
Sbjct: 388 SASLPSMEMIPAI-RNLNSHQESLEESSSADCISPTKRKALTAPVAKGLG 436
>03_02_0368 + 7840665-7841975
Length = 436
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +3
Query: 237 NETWQSIAKYTASDAYASTTLISAVVRNTTTFKSSITERAEKCLTALKARCLTSPVA 407
+E W+ A + A+T + TT K S+TE E L L+AR L +P A
Sbjct: 121 SEQWRLAAADLSRRLAAATRTRDEALEETTRLKHSLTE-LEMKLARLEARVLPTPTA 176
>02_02_0497 +
10961079-10963824,10964182-10964282,10964759-10964800,
10966918-10966986
Length = 985
Score = 29.1 bits (62), Expect = 3.5
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Frame = -2
Query: 419 ASPACDGGSQTSRFQCSQAFLGTFRNTRF--ERGGIADHGTDQSCRGISIAGGILRNRLP 246
A+ A GG F A R + ER DH S +A G+ NRL
Sbjct: 33 AAAATSGGGAPDVFDAVPALDDRMRCSALLRERAVGGDHYGCTSLLRWMLARGLRPNRLA 92
Query: 245 GFVEVCAHHASGVCLVGTVLDAVTHGVSVFVDFAD 141
V + A C G L HG++V V +AD
Sbjct: 93 LAAAVKSSSALPDCRGGAALGRCLHGLAVKVGYAD 127
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 117 KVHCSAXRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQ 251
K +A VCE + G+ + +C + D RM C + E WQ
Sbjct: 602 KEEAAAAAVCEGSGGGERVVDCACGA-VDDDGERMACCDICEAWQ 645
>08_02_0739 +
20584264-20584626,20586943-20587011,20587696-20588006,
20588447-20588648,20588887-20588958
Length = 338
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 245 LAIDCEVYRQRCLCLDNSDQCRGPQYHHVQIEYYGTCREMPDCTESEM--SDFPRRMRDW 418
L DC R C D+ QCRG + + E G C ++ + +E+E+ SDF M W
Sbjct: 238 LVFDCT--RDGCRRKDSWAQCRGCFFCVARCETCGGCIDLEELSETELACSDF-LCMECW 294
Query: 419 L 421
L
Sbjct: 295 L 295
>02_04_0576 + 24009297-24009980,24010062-24010376
Length = 332
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 523 AAIWKWCDLDAQTNDRFVSRHELFPIRAPLMGPRA 627
AA+ CD D + + RHE P+ AP GP A
Sbjct: 89 AALCAACDADIHSANPLARRHERLPV-APFFGPLA 122
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 327 TFKSSITERAEKCLTALKARCLTSP 401
T +S ERAE+C + L RC+ P
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRP 323
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 103 KTLA*KSTAAQXVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKP 246
+T A ++Q ++ T+ ++ ++S TV + + P +W TST P
Sbjct: 390 RTTATGVASSQSLTKSKTDPQSNSFSSSSTVSSTKLPSSWNDDTSTVP 437
>03_05_0469 +
24640925-24641081,24641292-24641644,24641870-24642043,
24642382-24642506,24643011-24643059,24643741-24643899,
24644037-24644219
Length = 399
Score = 27.9 bits (59), Expect = 8.0
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = -2
Query: 614 ISGALMGNSS*RDTNLSLV*ASRSHHFHIAALAQRP*GLIP---PPAPSSGNEGSALYVQ 444
+ G++MG S ++ + L +RSH I + P IP P P+ EGS + +
Sbjct: 59 VQGSVMGASRMDNSYVVLSKQNRSHSHGIPP--RPPSAGIPRAEPNQPTRAMEGSYIVLP 116
Query: 443 PCRA*C*KASPACDGGSQTS 384
P A K S + GG+Q S
Sbjct: 117 PAAASIYKTSASEGGGAQLS 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,743,804
Number of Sequences: 37544
Number of extensions: 457892
Number of successful extensions: 1435
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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