Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060189.seq
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_7030| Best HMM Match : Kazal_2 (HMM E-Value=4.6e-08) 38 0.010
SB_9563| Best HMM Match : Kazal_1 (HMM E-Value=1.7e-07) 37 0.018
SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.071
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 34 0.094
SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40) 34 0.12
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_13131| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 32 0.38
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 31 0.66
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 31 1.2
SB_47337| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_32446| Best HMM Match : RVT_1 (HMM E-Value=0.04) 29 2.7
SB_32070| Best HMM Match : RVT_1 (HMM E-Value=2.4e-15) 29 2.7
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0) 29 2.7
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 29 2.7
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 29 2.7
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 29 2.7
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 29 3.5
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_30511| Best HMM Match : Transposase_20 (HMM E-Value=8.3e-25) 29 4.7
SB_30470| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07) 29 4.7
SB_15403| Best HMM Match : CH (HMM E-Value=0) 29 4.7
SB_41393| Best HMM Match : WSC (HMM E-Value=0.06) 28 6.2
SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004) 28 6.2
SB_242| Best HMM Match : AFP (HMM E-Value=0.45) 28 6.2
SB_38480| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07) 28 8.1
SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012) 28 8.1
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_15291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_47403| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2) 28 8.1
>SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 108 PCLKVHCSAXRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSIAK 263
PCL V C CE DA C C + CP D VC ET+ ++ +
Sbjct: 302 PCLNVTCDYFAECEAFAADDAQCVCPRKCPSYVD---QVCATNGETFDNLCR 350
>SB_7030| Best HMM Match : Kazal_2 (HMM E-Value=4.6e-08)
Length = 286
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 108 PCLKVHCSAXRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSIAK 263
PCL V C CE DA C C + CP D VC ET+ ++ +
Sbjct: 36 PCLNVTCDYFAECEAFAADDAQCVCPRKCPSYVD---QVCATNGETFDNLCR 84
>SB_9563| Best HMM Match : Kazal_1 (HMM E-Value=1.7e-07)
Length = 170
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +3
Query: 108 PCLKVHCSAXRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSI 257
PCL V C CE DA C C + CP D VC ET+ ++
Sbjct: 79 PCLNVTCDYFAECEAFAADDAQCVCPRKCPSYVD---QVCATNGETFDNL 125
>SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 34.7 bits (76), Expect = 0.071
Identities = 29/109 (26%), Positives = 46/109 (42%)
Frame = +3
Query: 108 PCLKVHCSAXRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSIAKYTASDAYA 287
PC CSA + G+A+C C+ CP D VC + + + ++ K +A
Sbjct: 250 PCQTSPCSAPYAKCLVVQGEAVCTCL-SCPNMLDP---VCGSDGKNYDNVCK-LRQNACK 304
Query: 288 STTLISAVVRNTTTFKSSITERAEKCLTALKARCLTSPVACGTGFLTSC 434
+ TLI+ + R+ F TE + KAR + P G +C
Sbjct: 305 TNTLITLISRDACPF----TEARFTPPSQNKARTTSGPTTAGPCSNVTC 349
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 34.3 bits (75), Expect = 0.094
Identities = 19/64 (29%), Positives = 24/64 (37%)
Frame = +3
Query: 108 PCLKVHCSAXRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSIAKYTASDAYA 287
PC V C C G A+C C +CP E VC T+ S A A
Sbjct: 779 PCKNVECKFKARCVGLPDGSAVCECNTECPSEASP---VCGQDGRTYSSTCAMDARACQA 835
Query: 288 STTL 299
T++
Sbjct: 836 QTSI 839
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 108 PCLKVHCSAXRVCEINEHGDAMCNCIKDCPY 200
PCLK+ C C + G A C C DC +
Sbjct: 228 PCLKISCKFHSRCVKSSGGSANCVCPSDCSH 258
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 108 PCLKVHCSAXRVCEINEHGDAMCNCIKDC 194
PC ++ CS C + +G A C C + C
Sbjct: 709 PCSRISCSHYGRCVVRNNGKAHCVCPRQC 737
>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
Length = 1042
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +3
Query: 108 PCLKVHCSAXRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSIAKY 266
PCL V C CE DA C C CP D VC +T+ ++ +
Sbjct: 191 PCLNVTCEYFAECEAFAADDAQCVCPSKCPAYID---QVCGTNGQTFDNLCLF 240
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 108 PCLKVHCSAX-RVCEINEHGDAMCNCIKDCPYE 203
PC CSA CE+ ++ +A+C C KDCP E
Sbjct: 1766 PCQNFICSAPYSSCEVKDN-EAVCECPKDCPKE 1797
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = +3
Query: 108 PCLKVHCSAXRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSIAKYTASDAYA 287
PC V C C++ + G C C C YE VC +T+ + + AS
Sbjct: 1271 PCDNVSCDYYAQCQVEDDGSTSCKCPIFCTYE---YMPVCGTDGKTYGNKCEMRASACLK 1327
Query: 288 STTLISA 308
ST + A
Sbjct: 1328 STMVTVA 1334
>SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 108 PCLKVHCSAXRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETW 248
PC V C A + C + G A C C+ +CP D + VC + T+
Sbjct: 58 PCSNVFCHAGQEC-VAAKGKASCECLSECP---DHIKPVCGSDGVTY 100
>SB_13131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 108 PCLKVHCSAXRVCEINEHGDAMCNCIKDCPYETDSR 215
PC + C+ C+ DA C C + CP D R
Sbjct: 151 PCENMQCTHYATCKAYGPKDARCECAESCPTYDDER 186
>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 493
Score = 32.3 bits (70), Expect = 0.38
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Frame = +1
Query: 118 KSTAAQXVSAKSTN--TETPCVTASRTVPTRQTPDAW---CAQTSTKPGNRLRSIPPAML 282
K T + KS N + P V+ TR+ W C S G+ SI P L
Sbjct: 120 KKTKTKKKKKKSINRGSRRPPVSVDDGPGTRKRSTWWDNTCTSHSKCQGSTTHSIRPCTL 179
Query: 283 MPRQ-L*SVPWSAIPPRSNRVLRNVPRN 363
R + PWS P + R ++PR+
Sbjct: 180 QGRSPIEPTPWSPTPHTTGRASHSIPRD 207
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 31.5 bits (68), Expect = 0.66
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +1
Query: 58 TRSLMKRMKTKKSTWKTLA*KSTAAQXVSAKSTNTETPCVTASRTV-PTRQTPDAWCAQT 234
T S +K T ST K + + + +T T TP TA RT P TP+ +T
Sbjct: 1748 TLSTLKTTSTSTSTTKYIPPPHSPP---TTTTTTTTTPETTAPRTTTPETTTPETTTPRT 1804
Query: 235 STKPGNRLRSIPPAMLMPRQL*SVPWSAIP 324
+T + R+ P P++ + + +P
Sbjct: 1805 TTPETTKPRTTTPKTTTPKKTTAAKKAPLP 1834
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +3
Query: 108 PCLKVHCSAXRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSIAKYTA 272
PC C CEI E G +C C C D VC + +T+ + TA
Sbjct: 1798 PCKSATCQFGGRCEIQEDGTEVCICPTYCRLNYDP---VCGSNRKTYLNFCSLTA 1849
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = +3
Query: 108 PCLKVHCSAXRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETW--QSIAKYTASDA 281
PC + C + C ++ A C C K CP S +C + +T+ Q A A
Sbjct: 1337 PCNRTQCPSYSRCVLDSSLQAKCVCTKSCPL---SYEPLCASNGKTFPNQCALDMAACKA 1393
Query: 282 YASTTLI 302
S T +
Sbjct: 1394 NGSVTFL 1400
Score = 29.5 bits (63), Expect = 2.7
Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
Frame = +3
Query: 111 CLKVHCSAXRVCEINEHGDAMCNCIKDCP--YETDSRRMVCTNFNETWQSIAK-YTASD- 278
C KV C C + +G A C+C CP Y+ + T+ N + SD
Sbjct: 1515 CSKVTCHRYAKCNNHYNGTASCSCSSRCPLVYKPVCGTDMETHINACLLKLKSCQIESDL 1574
Query: 279 --AYASTTLIS-AVVRNTTTFKSSITERAEKCLTALKARC-LTSPVACGT---GFLTSCA 437
AY+ L + + + + + K RC LT + CG+ +L++CA
Sbjct: 1575 DVAYSGPCLPDPCLAKRCPPYAQCVPDHVLKARCTCPERCPLTYNLICGSDGVSYLSACA 1634
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +3
Query: 108 PCLKVHCSAXRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSIAKYTASDAYA 287
PC V C C G +C C+ CP + + VC + T++S + A A
Sbjct: 1407 PCSTVTCLYHSKCFPQADGTGVCICLDQCPPD-NQNASVCGSDLVTYRSECELKAKSCNA 1465
>SB_47337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 210 SRRMVCTNFNETWQSIAKYTASDAYASTTLISAVVRNTTTFKSSITERAEKCLTALKARC 389
S R+ CT + Y + Y ST L+ V+N + I+ER C T L +C
Sbjct: 63 SERICCTTLLQEQNGNHTYGLPNRYGSTRLLRKAVKNPKAPSTDISERI--CCTTL-LQC 119
Query: 390 LTSP 401
+P
Sbjct: 120 YPNP 123
>SB_32446| Best HMM Match : RVT_1 (HMM E-Value=0.04)
Length = 197
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 269 GILRNRLPGFVEVCAHHASGVCLVGTVLDAVTHGVSVFVDFADTXCAAVDFQARVFHVDF 90
G LRNR +V V H+S V + V G ++F+ + + C A Q R+F D
Sbjct: 68 GFLRNRSQ-YVVVNGSHSSKVHVTSGVPQGSVLGPTLFLLYINDICEASKSQVRLFADDT 126
Query: 89 FVF 81
++
Sbjct: 127 IIY 129
>SB_32070| Best HMM Match : RVT_1 (HMM E-Value=2.4e-15)
Length = 345
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 269 GILRNRLPGFVEVCAHHASGVCLVGTVLDAVTHGVSVFVDFADTXCAAVDFQARVFHVDF 90
G LRNR +V V H+S V + V G ++F+ + + C A Q R+F D
Sbjct: 178 GFLRNRSQ-YVVVNGSHSSKVHVTSGVPQGSVLGPTLFLLYINDICEASKSQVRLFADDT 236
Query: 89 FVF 81
++
Sbjct: 237 IIY 239
>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 949
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/81 (25%), Positives = 37/81 (45%)
Frame = +1
Query: 37 PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQXVSAKSTNTETPCVTASRTVPTRQTPD 216
PE+ +L + K ++ K+ + + T + VTA ++ PT+ TP+
Sbjct: 187 PEVLCDGDHTLERAQKVTEAVLSATY-KALMDHHIYLEGTLLKPNMVTAGQSCPTKYTPE 245
Query: 217 AWCAQTSTKPGNRLRSIPPAM 279
CAQ + R++PPAM
Sbjct: 246 Q-CAQATVTA--LARTVPPAM 263
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 269 GILRNRLPGFVEVCAHHASGVCLVGTVLDAVTHGVSVFVDFADTXCAAVDFQARVFHVDF 90
G LRNR +V V H+S V + V G ++F+ + + C A Q R+F D
Sbjct: 201 GFLRNRSQ-YVVVNGSHSSKVHVTSGVPQGSVLGPTLFLLYINDICEASKSQVRLFADDT 259
Query: 89 FVF 81
++
Sbjct: 260 IIY 262
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 269 GILRNRLPGFVEVCAHHASGVCLVGTVLDAVTHGVSVFVDFADTXCAAVDFQARVFHVDF 90
G LRNR +V V H+S V + V G ++F+ + + C A Q R+F D
Sbjct: 1739 GFLRNRSQ-YVVVNGSHSSKVHVTSGVPQGSVLGPTLFLLYINDICEASKSQVRLFADDT 1797
Query: 89 FVF 81
++
Sbjct: 1798 IIY 1800
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 269 GILRNRLPGFVEVCAHHASGVCLVGTVLDAVTHGVSVFVDFADTXCAAVDFQARVFHVDF 90
G LRNR +V V H+S V + V G ++F+ + + C A Q R+F D
Sbjct: 767 GFLRNRSQ-YVVVNGSHSSKVHVTSGVPQGSVLGPTLFLLYINDICEASKSQVRLFADDT 825
Query: 89 FVF 81
++
Sbjct: 826 IIY 828
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 269 GILRNRLPGFVEVCAHHASGVCLVGTVLDAVTHGVSVFVDFADTXCAAVDFQARVFHVDF 90
G LRNR +V V H+S V + V G ++F+ + + C A Q R+F D
Sbjct: 120 GFLRNRSQ-YVVVNGSHSSKVHVTSGVPQGSVLGPTLFLLYINDICEASKSQVRLFADDT 178
Query: 89 FVF 81
++
Sbjct: 179 IIY 181
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 269 GILRNRLPGFVEVCAHHASGVCLVGTVLDAVTHGVSVFVDFADTXCAAVDFQARVFHVDF 90
G LRNR +V V H+S V + V G ++F+ + + C A Q R+F D
Sbjct: 201 GFLRNRSQ-YVVVNGSHSSKVHVTSGVPQGSVLGPTLFLLYINDICEASKSQVRLFADDT 259
Query: 89 FVF 81
++
Sbjct: 260 IIY 262
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 269 GILRNRLPGFVEVCAHHASGVCLVGTVLDAVTHGVSVFVDFADTXCAAVDFQARVFHVDF 90
G LRNR +V V H+S V + V G ++F+ + + C A Q R+F D
Sbjct: 340 GFLRNRSQ-YVIVNGSHSSKVHVTSGVPQGSVLGPTLFLLYINDICEASKSQVRLFADDT 398
Query: 89 FVF 81
++
Sbjct: 399 IIY 401
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 73 KRMKTKKSTWKTLA*KSTAAQXVSA-KSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPG 249
++ T T + K T+ Q S+ + T+T P T S + T +P QT+T P
Sbjct: 666 QQTSTSPQETSTSSSKQTSTQQTSSSQQTSTSPPQTTTSPSQQTSTSPP----QTTTSPS 721
Query: 250 NRLRSIPPA 276
+ S PP+
Sbjct: 722 QQTTSPPPS 730
>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +1
Query: 139 VSAKSTNTETPCVTASRTVPTRQTP--DAWCAQTSTKPGNRLRSIPPAMLMPRQL*SVPW 312
VS + + +T + P R+T +A+ A T T G+R SI P M + P
Sbjct: 143 VSRRRAGSALGRLTTKKKTPPRRTNLLEAFRAATCTPAGSRSSSISPGMRSSLGSIAPPP 202
Query: 313 SAIPPRSNRVLRN 351
PRS LR+
Sbjct: 203 RTSTPRSRSTLRS 215
>SB_30511| Best HMM Match : Transposase_20 (HMM E-Value=8.3e-25)
Length = 317
Score = 28.7 bits (61), Expect = 4.7
Identities = 25/75 (33%), Positives = 34/75 (45%)
Frame = -3
Query: 433 HDVKKPVPHATGEVRHLAFSAVRHFSARSVILDLNVVVLRTTALIRVVEA*ASLAVYFAI 254
H VK+ V ATG H AF F+ DL +VV+ + R +A LA I
Sbjct: 51 HQVKRIVTEATGRYEH-AFV----FACDKA--DLPIVVVNPIQIRRYAQAIGVLAKTDKI 103
Query: 253 DCQVSLKFVHTMRLE 209
D V +F T++ E
Sbjct: 104 DASVIARFAATLKPE 118
>SB_30470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 912
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 108 PCLKVHCSAXRVCEINEHGDAMCNCIKDC 194
PC++V C VC+ DA C C +C
Sbjct: 276 PCIEVTCDFFAVCQAFGPKDARCICPHNC 304
>SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = +3
Query: 198 YETDSRRMVCTNFNET--WQSIAKYTASDAYASTTLISAVV--RNTTTFKSSITERAEKC 365
Y + + T++ T + S YT++ +Y STT ++ +TT++ S+ + +
Sbjct: 74 YTSTTSYTTTTSYTPTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTS 133
Query: 366 LTALKARCLTSPVACGTGFLTSCAT 440
T+ + T+ C T + +C T
Sbjct: 134 YTSTTSYTCTTSYTCTTSY--TCTT 156
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 94 STWKTLA*KSTAAQXVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRL 258
S+ TL KST + +T P T SR TPD+ A+ +T PG L
Sbjct: 451 SSGTTLRSKSTITPGSTVSPKSTAAPGTTVSRE--GTNTPDSLLAEGTTAPGTTL 503
>SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07)
Length = 585
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 94 STWKTLA*KSTAAQXVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRL 258
S+ TL KST + +T P T SR TPD+ A+ +T PG L
Sbjct: 423 SSGTTLRSKSTITPGSTVSPKSTAAPGTTVSRE--GTNTPDSLLAEGTTAPGTTL 475
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 108 PCLKVHCSAXRVCEINEHGDAMCNCIKDCPYETDSRRMVC 227
PC KV C+ C G C C + CP S ++VC
Sbjct: 1538 PCSKVKCAFYGQCVWYYDGRTQCECRRTCP---RSDQLVC 1574
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/66 (25%), Positives = 25/66 (37%)
Frame = +3
Query: 111 CLKVHCSAXRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSIAKYTASDAYAS 290
CL C VC+ G C C C T VC + T+ ++ TA+ +
Sbjct: 701 CLVQPCKYGGVCQAGADGKTKCVCSAAC---TREYAPVCGSDGNTYNNLCLLTAARCQSQ 757
Query: 291 TTLISA 308
T + A
Sbjct: 758 TFIYRA 763
>SB_41393| Best HMM Match : WSC (HMM E-Value=0.06)
Length = 361
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 254 DCEVYRQRCLCLDNSDQCRGPQYHHVQIEYYGTCREMPDCT 376
D + R C C ++ + +G YH+ I+YYG C P T
Sbjct: 226 DFYIKRLVCRCAQSA-KAKG--YHYFAIQYYGVCYSGPTTT 263
>SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004)
Length = 445
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Frame = +1
Query: 73 KRMKTKKSTWKTLA*KSTA-----AQXVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTS 237
K +K KK K LA +S A A + P TA +T PT TP A T+
Sbjct: 155 KPVKVKKEVNKALAMESAGFMNALATAAVAAPRKRKRPATTAQKT-PTATTPTTPTASTA 213
Query: 238 TKP 246
KP
Sbjct: 214 VKP 216
>SB_242| Best HMM Match : AFP (HMM E-Value=0.45)
Length = 147
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/76 (23%), Positives = 36/76 (47%)
Frame = +3
Query: 204 TDSRRMVCTNFNETWQSIAKYTASDAYASTTLISAVVRNTTTFKSSITERAEKCLTALKA 383
T + CT ++ S YT++ +Y STT + +TT++ S+ + R+ T +
Sbjct: 45 TPTTSYTCTT---SYTSTTSYTSTTSYTSTTSYT----STTSYTSTTSYRSTPSYTPTPS 97
Query: 384 RCLTSPVACGTGFLTS 431
T+ C T + ++
Sbjct: 98 YTCTTSYTCTTSYTST 113
>SB_38480| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 623
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 249 QSIAKYTASDAYASTTLISAVVRNTTTFKSS---ITERAEKCLTALKARCLT 395
Q + Y A+ +A+ I +++ N FK IT+ ++ C T K C+T
Sbjct: 123 QVMTCYEAASNWAARCQILSIMANKVRFKKIVRYITDLSQHCYTEAKRHCIT 174
>SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07)
Length = 778
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 496 FRLPLHLQVMRGQLSTFSHVAHDVKKPVPHATGE 395
+ LPL L V+R T + + D+ PHAT E
Sbjct: 598 YPLPLDLGVIRSLEKTLINCSRDLNYTAPHATSE 631
>SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)
Length = 281
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 448 T*RADPSLPEDGAGGGIKPHGRWANAAIW 534
T R P P +GG K G WA+AA W
Sbjct: 225 TRRPPPDTPAPPSGGVCKSIGPWASAAEW 253
>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +2
Query: 113 PESPLQRXTCLRNQRTRRRHV*LHQGLSLRDRLQTHGVHKLQRNLAIDCEV---YRQRCL 283
P +P + T R R+ + + SLR RLQ V LQ + + E+ +++ L
Sbjct: 282 PAAPARSMTSPRRNGRRKTRKHMDRNASLRARLQRCSVDVLQASPSELHEIQNYWKRMSL 341
Query: 284 CLDNSD 301
CLD+ D
Sbjct: 342 CLDDID 347
>SB_15291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 747
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 452 RELTPHYLKMEREAESNLTVVGPMPLYGNGAIWTLRPMIDSCPVT 586
R P Y+K+ R +++ + +P N I +LR + + P+T
Sbjct: 381 RLFNPKYVKVSRPNAADIDQLDEVPFLNNNEIQSLRTELQTSPMT 425
>SB_47403| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 452 RELTPHYLKMEREAESNLTVVGPMPLYGNGAIWTLRPMIDSCPVT 586
R P Y+K+ R +++ + +P N I +LR + + P+T
Sbjct: 178 RLFNPKYVKVSRPNAADIDQLDEVPFLNNNEIQSLRTELQTSPMT 222
>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
Length = 466
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +2
Query: 113 PESPLQRXTCLRNQRTRRRHV*LHQGLSLRDRLQTHGVHKLQRNLAIDCEV---YRQRCL 283
P +P + T R R+ + + SLR RLQ V LQ + + E+ +++ L
Sbjct: 396 PAAPARSMTSPRRNGRRKTRKHMDRNASLRARLQRCSVDVLQASPSELHEIQNYWKRMSL 455
Query: 284 CLDNSD 301
CLD+ D
Sbjct: 456 CLDDID 461
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,807,031
Number of Sequences: 59808
Number of extensions: 480361
Number of successful extensions: 1507
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -