Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060189.seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45290.1 68415.m05637 transketolase, putative strong similari...    31   0.95 
At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containi...    29   3.8  
At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II...    28   5.0  
At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II...    28   5.0  
At2g04160.1 68415.m00400 subtilisin-like protease (AIR3) almost ...    28   5.0  
At3g17200.1 68416.m02194 hypothetical protein                          28   6.7  
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr...    28   6.7  
At2g42380.2 68415.m05245 bZIP transcription factor family protein      27   8.8  
At2g42380.1 68415.m05244 bZIP transcription factor family protein      27   8.8  

>At2g45290.1 68415.m05637 transketolase, putative strong similarity
           to transketolase 1 [Capsicum annuum] GI:3559814;
           contains Pfam profiles PF02779: Transketolase, pyridine
           binding domain, PF02780: Transketolase, C-terminal
           domain, PF00456: Transketolase, thiamine diphosphate
           binding domain
          Length = 741

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
 Frame = -2

Query: 497 IPPPAPSSGNEGSALYVQPCRA*C*KASPACDGGSQ---TSRFQCSQAFLGTFRNTRFE- 330
           +P   P S  + +    Q C     KA P   GGS    +S     +AF G F+    E 
Sbjct: 421 LPTYTPDSPGDATRNLSQQCLNALAKAVPGFLGGSADLASSNMTMLKAF-GNFQKATPEE 479

Query: 329 ---RGGIADHGTDQSCRGISIAGGILRNRLPGFVEVCA 225
              R G+ +HG    C GI++         PGF+  CA
Sbjct: 480 RNLRFGVREHGMGAICNGIAL-------HSPGFIPYCA 510


>At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containing
           protein low similarity to Chain A, Human Mrf-2 Domain
           [Homo sapiens] GI:14278238; contains Pfam profile
           PF01388: ARID/BRIGHT DNA binding domain
          Length = 398

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 603 SNGEQLVTGHESIIGLSVQIAPFPYSGIGPTTVRFDSASRSI 478
           +NGE  + G   I+  SV+  P  + G G    R DSA+R++
Sbjct: 198 NNGELNLPGSTLILSSSVEKEPSSHQGSGSGRARRDSAARAM 239


>At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 613

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 329 RGGIADHGTDQSCRGISIAGGILRNRLPG 243
           RG  ADHG + S  G+S+ GG  R    G
Sbjct: 68  RGSEADHGNNISDGGVSVRGGYQRKHRRG 96


>At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 646

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 329 RGGIADHGTDQSCRGISIAGGILRNRLPG 243
           RG  ADHG + S  G+S+ GG  R    G
Sbjct: 68  RGSEADHGNNISDGGVSVRGGYQRKHRRG 96


>At2g04160.1 68415.m00400 subtilisin-like protease (AIR3) almost
           identical to subtilisin-like protease AIR3 GI:4218991
           from [Arabidopsis thaliana], missing 200 aa at
           N-terminus
          Length = 772

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
 Frame = -2

Query: 308 GTDQSCRGISIAGGILRNRLPGFVEVCAHHASGVCLVGTVLDAVTHGVSVFVDFADTXCA 129
           GT  SC  IS   G+L+ R P +        S +    T++D +   +    +   T  +
Sbjct: 559 GTSMSCPHISGIAGLLKTRYPSWSPAAIR--SAIMTTATIMDDIPGPIQNATNMKATPFS 616

Query: 128 --AVDFQARVFHVDFFVFILFIRDLVEKVVNSGYFCLMVSLLS 6
             A   Q  +      V+ L I+D +  + + GY    +S+ S
Sbjct: 617 FGAGHVQPNLAVNPGLVYDLGIKDYLNFLCSLGYNASQISVFS 659


>At3g17200.1 68416.m02194 hypothetical protein
          Length = 310

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 153 NEHGDAMCNCIKDCPYET-DSRRMVCTNFNETWQSIAK 263
           N+H +  C+ + D P ET D    VCT   + W+ IAK
Sbjct: 175 NQHVNTSCS-LCDEPMETRDHLFFVCTYSRKVWEDIAK 211


>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
           protein (PEX10) identical to zinc-binding peroxisomal
           integral membrane protein GI:4337011 from [Arabidopsis
           thaliana]
          Length = 381

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +3

Query: 318 NTTTFKSSITERAEKCLTALKARCLTSPVACGTGFLTSC-ATWLN 449
           N +T  S+ TE   KC   L  R   +   CG  F  SC   W N
Sbjct: 312 NWSTSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWCN 356


>At2g42380.2 68415.m05245 bZIP transcription factor family protein
          Length = 321

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 127 AAQXVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRLRSI 267
           ++Q +S  ST T T   TA+ TV      D +   ++++ GN  RSI
Sbjct: 19  SSQKLSPFSTPTATAVATATTTVQNPSWVDEFLDFSASRRGNHRRSI 65


>At2g42380.1 68415.m05244 bZIP transcription factor family protein
          Length = 310

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 127 AAQXVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRLRSI 267
           ++Q +S  ST T T   TA+ TV      D +   ++++ GN  RSI
Sbjct: 19  SSQKLSPFSTPTATAVATATTTVQNPSWVDEFLDFSASRRGNHRRSI 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,852,151
Number of Sequences: 28952
Number of extensions: 322200
Number of successful extensions: 904
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)