Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060188.seq
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   3.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   5.0  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   6.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 646 FTICRY-FYR*NLIPQCIYYY 587
           F +C Y FY   +I  C+YY+
Sbjct: 96  FLLCTYYFYYAFIILLCVYYF 116



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 646 FTIC-RYFYR*NLIPQCIYYY 587
           F +C  YFY   +I  CIYY+
Sbjct: 281 FLLCIYYFYCALIILLCIYYF 301



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 646 FTICRYFYR*NLIPQCIYYY 587
           FTI   FY   +I  CIYY+
Sbjct: 222 FTIHLLFYCVLIILLCIYYF 241


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 509 CRSGICGCELNSN 471
           C+ G+C  E+NS+
Sbjct: 140 CKKGVCTMEINSD 152


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 254 KSNDASENGDATEKKETXVKRKSV 325
           K  D  E+ D   KKE   K+K++
Sbjct: 246 KIEDVGEDEDEDTKKEDKKKKKTI 269


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,215
Number of Sequences: 336
Number of extensions: 2160
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)