Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060188.seq
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.58 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.3  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   4.1  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   5.4  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   5.4  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   7.1  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    25   7.1  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   9.4  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 23/71 (32%), Positives = 35/71 (49%)
 Frame = -2

Query: 280  TVLRCIVAFSASPFSAGESSGASSVPFSLPLLSAASTFLXGDFLTGDSFGSVEVTSSGAT 101
            TV+   V   +S   +  SS  SSV  +  LLS++  F    F TG S  S+  + +G+ 
Sbjct: 3484 TVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFSTGSSSFSL-TSENGSV 3542

Query: 100  SFLSTAASAIV 68
            S  S  +S+ V
Sbjct: 3543 SSSSLVSSSPV 3553


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = -2

Query: 316 PLHTSLFLFCGITVLRCIVAFSASPFSAGESSGASSVPFSLPLLSAASTFL-XGDFLTG- 143
           P  TSL +    T      A ++SP S   S  +SS   S P  S +S  +     ++G 
Sbjct: 587 PSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGS 646

Query: 142 DSFGSVEVTSSGATSFLSTAASAIV 68
            S  S  +++   +S LST +S+++
Sbjct: 647 SSILSSSISTIPISSSLSTYSSSVI 671


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 469 PLEFNSHPHIPLLQCI 516
           P+EF S PHI L  CI
Sbjct: 86  PIEFTSFPHIDLSACI 101


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 444 WFTAMHQXPIRVQLTSTYPAPTMYY 518
           W T +H+ P  V  T   P P  +Y
Sbjct: 354 WITKIHRQPCHVVYTDFRPTPLQHY 378


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 17/77 (22%), Positives = 35/77 (45%)
 Frame = -2

Query: 316 PLHTSLFLFCGITVLRCIVAFSASPFSAGESSGASSVPFSLPLLSAASTFLXGDFLTGDS 137
           P +++     G T        S+SPF +  S   +SVP S+   +++S+         ++
Sbjct: 269 PSYSTNLTTTGSTTTTGSATVSSSPFYSNSSVIPTSVPSSVSSFTSSSSSYTTTLTASNT 328

Query: 136 FGSVEVTSSGATSFLST 86
             +   T +G+ +F S+
Sbjct: 329 SVTYTGTGTGSATFTSS 345


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 605 TMYLLLYNPKLKSDTKELNPS*YEAISMGVIHCRSGICGCELNSNGXLM 459
           T+YLLL+ PKL  + K LN      +    I CR      ++  +G +M
Sbjct: 349 TIYLLLFIPKL--EAKYLNNLSKSLMFSNAISCRLDSLDDDIRMHGMIM 395


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 523 ILIASYYEGLSSFVSDLSLGLYNNKYIVVLNFTC 624
           IL+   + G   F + +   LY +KY+ +L  TC
Sbjct: 325 ILLKVLFTGYFPFKTSVKTDLYYSKYMSILTDTC 358


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -2

Query: 226 SSGASSVPFSLPLLSAASTFLXGDFLTGDSFGSVEVTSSGATSFLSTAASAIVA 65
           SSG++ VP S+P L      L  D+ T +    +      ATSF  T  S I A
Sbjct: 168 SSGSTGVPKSMPFLMKKYA-LGYDYGTPEFMNHLSTPMVMATSFALTTLSWINA 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,056,917
Number of Sequences: 5004
Number of extensions: 33702
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)