Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060188.seq
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0633 + 19540584-19541383,19541557-19541610,19542123-19542444     30   1.8  
10_01_0275 - 2904601-2904900,2905083-2905233,2905522-2905598,290...    28   7.4  
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396...    28   7.4  
01_07_0203 - 41968071-41968154,41969499-41969858,41969946-41970248     28   7.4  
01_07_0191 + 41885121-41885909,41886152-41886190,41886701-418867...    28   7.4  
02_05_0511 + 29644266-29644399,29644502-29644913,29645007-296450...    27   9.7  

>08_02_0633 + 19540584-19541383,19541557-19541610,19542123-19542444
          Length = 391

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -2

Query: 262 VAFSASPFSAGESSGASSVPFSLPLLSAASTFLXGDFLTGDSFGSVEVTSSGATS 98
           +A S +  S        ++P + PL++AAS+    D   G   G  E +SS A +
Sbjct: 184 IAASKNASSRSRGGAGRAMPINAPLVAAASSSSGSDHSGGGDDGGSETSSSSAAA 238


>10_01_0275 -
           2904601-2904900,2905083-2905233,2905522-2905598,
           2907201-2907390,2908796-2908981,2910521-2910571,
           2911476-2911885,2912252-2912509,2912768-2913070
          Length = 641

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 116 FLRCNFLLVDGCVCHCCKV 60
           F RC FLL   C+ +CCK+
Sbjct: 423 FGRCCFLLKSVCLANCCKI 441


>03_01_0527 +
           3960982-3961290,3961371-3961464,3961898-3962084,
           3962194-3962449,3962561-3962773,3962856-3962942,
           3963089-3963223,3963296-3963409,3963507-3963754,
           3963824-3963904,3963979-3964210,3964340-3964438,
           3964513-3964701,3964928-3965023
          Length = 779

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 512 HCRSGICGCELNSNGXLMHCSKPSIYNL 429
           HCR G C C+    G  + CS PS Y++
Sbjct: 275 HCRGGFCQCDGGYFG--IDCSMPSNYSV 300


>01_07_0203 - 41968071-41968154,41969499-41969858,41969946-41970248
          Length = 248

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 608 TTMYLLLYNPKLKSDTKELNPS*YEAISMGVIHCRSGICGCELNSNG 468
           T   +L Y P+L+   + L     E  +    +C+ G+ G +L S G
Sbjct: 109 TVSRVLKYIPELQKQVENLERKKKELTTTSTTNCKPGVLGSQLMSEG 155


>01_07_0191 +
           41885121-41885909,41886152-41886190,41886701-41886784,
           41887331-41887413,41887501-41887588,41887736-41887990,
           41888275-41888403
          Length = 488

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -2

Query: 274 LRCIVAFSASPFSAGESSGASSVPFSLPLLS----AASTFLXGDFLTGDSFGSVEVTSSG 107
           L C V ++A P  A   S A+SVP  L        AA+  L G F  GD+   VE   + 
Sbjct: 66  LLCGVPYTALPI-ASVLSAAASVPMLLRRYHVTPHAAAECLDGSFRAGDAVLIVEDLVTT 124

Query: 106 ATSFLSTAA 80
            +S L T A
Sbjct: 125 GSSVLETVA 133


>02_05_0511 +
           29644266-29644399,29644502-29644913,29645007-29645075,
           29645169-29645333,29645771-29645870,29645906-29646081
          Length = 351

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 23/56 (41%), Positives = 25/56 (44%)
 Frame = -2

Query: 262 VAFSASPFSAGESSGASSVPFSLPLLSAASTFLXGDFLTGDSFGSVEVTSSGATSF 95
           VAF AS  S        SV F+LP L  AS  L   F    SF  VE     AT+F
Sbjct: 67  VAFLASFSSPSVIFEQISVIFALPKLFIASFTLVLPFFPTGSFERVEEEGDVATAF 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,813,716
Number of Sequences: 37544
Number of extensions: 203922
Number of successful extensions: 551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)