Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060188.seq
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          30   1.4  
SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)                  29   3.3  

>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -2

Query: 253 SASPFSAGESS-GASSVPFSLPLLSAASTFLXGDFLTGDSFGSVEVTSSGATSFLSTAAS 77
           S S F    SS      P SLP     S+ L  DFLT  S  S  +TSS + S   T++S
Sbjct: 453 SLSDFLTSSSSLSVFPTPSSLPSDFLTSSSLPSDFLTSSSSLSDFLTSSSSLSDFLTSSS 512

Query: 76  AI 71
           ++
Sbjct: 513 SL 514



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = -2

Query: 226 SSGASSVPFSLPLLSAASTFLXGDFLTGDSFGSVEVTSSGATSFLSTAASAI 71
           SS  S    SLP     S+ L  DFLT  S  S  +TSS + S   T++S++
Sbjct: 708 SSSLSDFLTSLPSDFLTSSSLPSDFLTSSSSLSDFLTSSSSLSDFLTSSSSL 759



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 193 PLLSAASTFLXGDFLTGDSFGSVEVTSSGATS-FLSTAAS 77
           P+      FL  DFLT  S  S  +TSS + S FLS ++S
Sbjct: 304 PISEQQGIFLPSDFLTSSSLPSDFLTSSSSLSDFLSLSSS 343



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -2

Query: 253  SASPFSAGESS-GASSVPFSLPLLSAASTFLXGDFLTGDSFGSVEVTSSGATSFLSTAAS 77
            S S F    SS        SLP     S+ L  DFLT  S  SV  TSS   S   T++S
Sbjct: 848  SLSDFLTSSSSLSVFPTSSSLPSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSDFLTSSS 907

Query: 76   AI 71
            ++
Sbjct: 908  SL 909



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -2

Query: 199 SLPLLSAASTFLXGDFLTGDSFGSVEVTSSGATSFLSTAASAI 71
           SLP     S+ L  DFLT  S  SV  TSS   S   T++S++
Sbjct: 602 SLPSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSDFLTSSSSL 644



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -2

Query: 199  SLPLLSAASTFLXGDFLTGDSFGSVEVTSSGATSFLSTAASAI 71
            SLP     S+ L  DFLT  S  SV  TSS   S   T++S++
Sbjct: 1197 SLPSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSDFLTSSSSL 1239


>SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)
          Length = 1362

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -2

Query: 253 SASPFSAGESSGASSVPFSLPLLSAASTFLXGDFLTGDSFGSVEVTSSGATSFLSTAASA 74
           SA  FS G   G    PF LP++S AS        +   FG V++  S   + +S+ +++
Sbjct: 644 SAFMFSLGNPDGRK--PFKLPIISPASVAATSTSTSMPCFGRVDLVLSDVMANISSQSTS 701


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,228,571
Number of Sequences: 59808
Number of extensions: 245303
Number of successful extensions: 696
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)