Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060188.seq
(647 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U04811-1|AAA79334.2| 749|Homo sapiens trophinin protein. 31 2.7
AL049732-7|CAB86651.2| 1431|Homo sapiens trophinin protein. 31 2.7
AL049732-6|CAM26848.1| 1034|Homo sapiens trophinin protein. 31 2.7
AB029037-1|BAA83066.3| 1458|Homo sapiens KIAA1114 protein protein. 31 2.7
BC103509-1|AAI03510.1| 958|Homo sapiens SLIT and NTRK-like fami... 31 4.7
BC098287-1|AAH98287.1| 958|Homo sapiens SLIT and NTRK-like fami... 31 4.7
BC098106-1|AAH98106.1| 958|Homo sapiens SLIT and NTRK-like fami... 31 4.7
AL603883-1|CAH73026.1| 958|Homo sapiens SLIT and NTRK-like fami... 31 4.7
AB020725-1|BAA74941.1| 966|Homo sapiens KIAA0918 protein protein. 31 4.7
>U04811-1|AAA79334.2| 749|Homo sapiens trophinin protein.
Length = 749
Score = 31.5 bits (68), Expect = 2.7
Identities = 21/65 (32%), Positives = 25/65 (38%)
Frame = -2
Query: 277 VLRCIVAFSASPFSAGESSGASSVPFSLPLLSAASTFLXGDFLTGDSFGSVEVTSSGATS 98
+L V F SP S+G G S ST G T SFG TS+
Sbjct: 210 ILSTSVCFGGSPSSSGSFGGTLSTSICFGGSPCTSTGFGGTLSTSVSFGGSSSTSANFGG 269
Query: 97 FLSTA 83
LST+
Sbjct: 270 TLSTS 274
>AL049732-7|CAB86651.2| 1431|Homo sapiens trophinin protein.
Length = 1431
Score = 31.5 bits (68), Expect = 2.7
Identities = 21/65 (32%), Positives = 25/65 (38%)
Frame = -2
Query: 277 VLRCIVAFSASPFSAGESSGASSVPFSLPLLSAASTFLXGDFLTGDSFGSVEVTSSGATS 98
+L V F SP S+G G S ST G T SFG TS+
Sbjct: 892 ILSTSVCFGGSPSSSGSFGGTLSTSICFGGSPCTSTGFGGTLSTSVSFGGSSSTSANFGG 951
Query: 97 FLSTA 83
LST+
Sbjct: 952 TLSTS 956
>AL049732-6|CAM26848.1| 1034|Homo sapiens trophinin protein.
Length = 1034
Score = 31.5 bits (68), Expect = 2.7
Identities = 21/65 (32%), Positives = 25/65 (38%)
Frame = -2
Query: 277 VLRCIVAFSASPFSAGESSGASSVPFSLPLLSAASTFLXGDFLTGDSFGSVEVTSSGATS 98
+L V F SP S+G G S ST G T SFG TS+
Sbjct: 495 ILSTSVCFGGSPSSSGSFGGTLSTSICFGGSPCTSTGFGGTLSTSVSFGGSSSTSANFGG 554
Query: 97 FLSTA 83
LST+
Sbjct: 555 TLSTS 559
>AB029037-1|BAA83066.3| 1458|Homo sapiens KIAA1114 protein protein.
Length = 1458
Score = 31.5 bits (68), Expect = 2.7
Identities = 21/65 (32%), Positives = 25/65 (38%)
Frame = -2
Query: 277 VLRCIVAFSASPFSAGESSGASSVPFSLPLLSAASTFLXGDFLTGDSFGSVEVTSSGATS 98
+L V F SP S+G G S ST G T SFG TS+
Sbjct: 919 ILSTSVCFGGSPSSSGSFGGTLSTSICFGGSPCTSTGFGGTLSTSVSFGGSSSTSANFGG 978
Query: 97 FLSTA 83
LST+
Sbjct: 979 TLSTS 983
>BC103509-1|AAI03510.1| 958|Homo sapiens SLIT and NTRK-like family,
member 5 protein.
Length = 958
Score = 30.7 bits (66), Expect = 4.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 253 SASPFSAGESSGASSVPFSLPLLSAASTFLXGDFLTGDSF 134
+ +P S G GASSVP S+ +LS F+ F+ F
Sbjct: 646 TGAPASLGAGGGASSVPLSVLILSLLLVFIMSVFVAAGLF 685
>BC098287-1|AAH98287.1| 958|Homo sapiens SLIT and NTRK-like family,
member 5 protein.
Length = 958
Score = 30.7 bits (66), Expect = 4.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 253 SASPFSAGESSGASSVPFSLPLLSAASTFLXGDFLTGDSF 134
+ +P S G GASSVP S+ +LS F+ F+ F
Sbjct: 646 TGAPTSLGAGGGASSVPLSVLILSLLLVFIMSVFVAAGLF 685
>BC098106-1|AAH98106.1| 958|Homo sapiens SLIT and NTRK-like family,
member 5 protein.
Length = 958
Score = 30.7 bits (66), Expect = 4.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 253 SASPFSAGESSGASSVPFSLPLLSAASTFLXGDFLTGDSF 134
+ +P S G GASSVP S+ +LS F+ F+ F
Sbjct: 646 TGAPASLGAGGGASSVPLSVLILSLLLVFIMSVFVAAGLF 685
>AL603883-1|CAH73026.1| 958|Homo sapiens SLIT and NTRK-like family,
member 5 protein.
Length = 958
Score = 30.7 bits (66), Expect = 4.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 253 SASPFSAGESSGASSVPFSLPLLSAASTFLXGDFLTGDSF 134
+ +P S G GASSVP S+ +LS F+ F+ F
Sbjct: 646 TGAPASLGAGGGASSVPLSVLILSLLLVFIMSVFVAAGLF 685
>AB020725-1|BAA74941.1| 966|Homo sapiens KIAA0918 protein protein.
Length = 966
Score = 30.7 bits (66), Expect = 4.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 253 SASPFSAGESSGASSVPFSLPLLSAASTFLXGDFLTGDSF 134
+ +P S G GASSVP S+ +LS F+ F+ F
Sbjct: 654 TGAPASLGAGGGASSVPLSVLILSLLLVFIMSVFVAAGLF 693
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,439,446
Number of Sequences: 237096
Number of extensions: 1180468
Number of successful extensions: 2656
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2653
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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