Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060188.seq
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF016684-4|AAB66208.1|  159|Caenorhabditis elegans Hypothetical ...    28   5.0  
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ...    28   6.6  

>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical protein
            ZK430.1 protein.
          Length = 1650

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -2

Query: 334  IKSH--RFPLH--TSLFLFCGITVLRCIVAFSASPFSAGESSGAS 212
            I+SH  R  +H  TSL   C  TV  CI  FS   + +  S G+S
Sbjct: 1149 IRSHNMRSTIHHATSLLKTCLATVQECIARFSKPQYDSAASPGSS 1193


>AF016684-4|AAB66208.1|  159|Caenorhabditis elegans Hypothetical
           protein F45C12.9 protein.
          Length = 159

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 14  VLNFYSLFKLFHFFNLPCNNGR 79
           +LN+Y L  LF+F+ + C +G+
Sbjct: 62  ILNYYYLCNLFNFYGIVCEDGQ 83


>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
            protein R148.3a protein.
          Length = 1115

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 244  PFSAGESSGASSVPFSLPLLSA 179
            P+S+G S+G  S P  +PLLSA
Sbjct: 1075 PYSSGGSNGGRSPPPEMPLLSA 1096


>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
            protein R148.3b protein.
          Length = 1130

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 244  PFSAGESSGASSVPFSLPLLSA 179
            P+S+G S+G  S P  +PLLSA
Sbjct: 1087 PYSSGGSNGGRSPPPEMPLLSA 1108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,456,728
Number of Sequences: 27780
Number of extensions: 189314
Number of successful extensions: 554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)