Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060187.seq
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||...    49   5e-07
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    29   0.55 
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   2.2  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   3.0  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   5.2  
SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.2  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   5.2  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   9.0  

>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 289

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 26/77 (33%), Positives = 43/77 (55%)
 Frame = +2

Query: 251 QVAKKWPQAGQAFCNAAQLHLKAGVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYT 430
           ++ K+   AG AF  AA++ LK   + DAA+ +V+A   Y++   +EA   L  AIE++T
Sbjct: 46  RLQKQGSAAGYAFEKAAEMQLKTDDKDDAASTYVEAFKSYRREKPSEAARVLQIAIELFT 105

Query: 431 DMGRFTVAAKQHQNIAE 481
             G F  AA    ++ +
Sbjct: 106 RRGNFRRAANYKMDLGD 122



 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/59 (20%), Positives = 27/59 (45%)
 Frame = +1

Query: 430 RYGSFHCGCQTTPEHCGVYETECVDLVGAMQHYEQAADYFRGEESTSFRQQVHAEAGAL 606
           R G+F        +   ++E E  D   A+  YE A +++  +++ +   + + +A  L
Sbjct: 106 RRGNFRRAANYKMDLGDIFEQELQDTKAALGAYEDAGEWYSSDQADALANKAYLKAADL 164


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 457  QTTPEHCGVYETECVDLVGAMQHYEQAADYFRGEES 564
            QT  + C  YE  C++ V   +  EQA  Y+    S
Sbjct: 3094 QTLKKECKAYERSCIENVKLKKRTEQATAYYASSSS 3129


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +2

Query: 296  AAQLHLKAGVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYTDMGRFTVA 454
            A   ++ A  +HDA    +DA+    + ++  A   +++ I+I +DM R+ V+
Sbjct: 1090 ATSCYMNALAKHDAGEIQLDANLFQSQIESLIANDRIVEGIQIVSDMKRYNVS 1142


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 490 SRTLRNVLVLFGSHSETTHIGVDLDRFQETGHGLVSIT 377
           S+T+    + FG+     H GV   R  ++G+G+V ++
Sbjct: 439 SKTICREYIQFGNAFNLMHCGVSYVRRHQSGYGVVGVS 476


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 292 TESLPCLRPLLGHLNKLAALR*QSTASSIFEE 197
           T SLP +  LL H N  A+   QS +SS F++
Sbjct: 36  TNSLPSMNGLLNHENSFASQ--QSLSSSAFDD 65


>SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 135

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 207 IEEAVDCYLRAANLFKWPRSGLKQGRLSVMQHSS 308
           +EE  D Y+R + +F   RS LK+ R   +QH++
Sbjct: 97  VEEMKD-YMRLSIIFTKNRSNLKRKRKKTVQHNA 129


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 344 NFVDASNCYKKCDANEAVSCLLK 412
           N+ +ASNCY+  D     +C +K
Sbjct: 319 NYREASNCYRALDRTYVQNCRIK 341


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 368 NS*KHLQNWWQHHGEHQLSSGAVLHYR 288
           NS  HL+N +QH  E    SGA   Y+
Sbjct: 65  NSNMHLENQFQHFHEPNKESGAFGSYK 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,623
Number of Sequences: 5004
Number of extensions: 37610
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)