Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060187.seq
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1083 + 11096520-11096664,11097543-11097592,11097682-110977...    71   6e-13
04_04_1169 - 31446291-31446395,31446789-31446918,31447047-314471...    29   2.3  
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157...    29   3.0  
11_04_0351 + 16666398-16666532,16666911-16667048,16667398-166683...    27   9.3  
02_01_0524 + 3798019-3798265,3798419-3798651,3798765-3799014,379...    27   9.3  

>08_01_1083 +
           11096520-11096664,11097543-11097592,11097682-11097754,
           11099122-11099201,11099354-11099505,11100653-11100812,
           11100886-11100933,11101118-11101198,11101517-11101597
          Length = 289

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 29/77 (37%), Positives = 50/77 (64%)
 Frame = +2

Query: 251 QVAKKWPQAGQAFCNAAQLHLKAGVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYT 430
           ++AK W +A Q +   A  HLK   +H+AA+ +V+A+NCYKK    EA   L +A++++ 
Sbjct: 44  KLAKNWSRAAQVYIKIANCHLKGDSKHEAASAYVEAANCYKKFSPQEAAQALNQAVDLFL 103

Query: 431 DMGRFTVAAKQHQNIAE 481
           ++GR  +AA+  ++I E
Sbjct: 104 EIGRLNMAARYCKDIGE 120


>04_04_1169 -
           31446291-31446395,31446789-31446918,31447047-31447126,
           31447396-31447474,31448178-31448315,31448386-31448522
          Length = 222

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +2

Query: 296 AAQLHLKAGVRHDAATNFVDASNCYKKCDA-NEAVSCLLKAIEIYTDMGRFTVAAKQHQN 472
           AA L++K     DAA  F+   +   KC+A N      L AI IY     F  A K + +
Sbjct: 83  AASLYVKLEKYSDAAATFLRLGSAADKCNAINSQCKGYLSAIIIYLYAHDFQQAQKCYND 142

Query: 473 IAE 481
            +E
Sbjct: 143 CSE 145


>04_03_0867 -
           20414999-20415160,20415255-20415384,20415515-20415702,
           20415967-20416001,20416363-20416579,20416737-20416820,
           20417609-20417875,20417954-20418061,20418163-20418249,
           20418629-20419399
          Length = 682

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -2

Query: 456 AATVKRPISV*ISIAFRRQDTASLASHFL*QLEASTKLVAASWRTPAFKWSCAALQKAC 280
           A T+  P +   + +FR + TA+  S      + +   VA  W+T    W+CAA    C
Sbjct: 91  ARTLALPATPASACSFRLRATAARDSPLPSLFDEAFPFVAVEWKTIVKGWACAAAAVYC 149


>11_04_0351 +
           16666398-16666532,16666911-16667048,16667398-16668306,
           16668383-16668511,16668774-16668996,16669085-16669231,
           16669332-16669573,16669660-16669689,16669784-16669865,
           16669968-16670128,16670775-16670898,16671206-16671414
          Length = 842

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 263 KWPQAGQAFCNAAQLHLKAGV-RHDAATNFVDASNCYKKC-DANEAVSCLLKAIEIYT 430
           K P   +AF    ++ L+ G+ +H+ A N V     Y KC D   A +C+L   +I T
Sbjct: 128 KAPLEAKAFVRRTKV-LRDGIWKHEDAANLVPGDIIYLKCGDIVPANACVLNMAQIDT 184


>02_01_0524 +
           3798019-3798265,3798419-3798651,3798765-3799014,
           3799104-3799249,3799372-3799577,3799721-3799845,
           3800154-3800734
          Length = 595

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 281 QAFCNAAQLHLKAGVRHDAATNFV--DASNCYKKCDANEAVSCLLKAIEIYTDMGR 442
           +A+CNA  LH   GV  +   + +  +A+      D      C  KA+E+Y  M R
Sbjct: 218 RAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKR 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,214,697
Number of Sequences: 37544
Number of extensions: 281407
Number of successful extensions: 655
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)