Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060187.seq
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46161| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   4e-10
SB_37953| Best HMM Match : Myco_haema (HMM E-Value=4.1)                29   3.1  
SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)                 29   3.1  
SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2)              27   9.5  

>SB_46161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
 Frame = +2

Query: 251 QVAKKWPQAGQAFCNAAQLHLKA-GVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIY 427
           ++AKKW  AG AF  AA++  ++   +H+AA ++VDA  C+KK D  EAV    +AI+I+
Sbjct: 53  KMAKKWSAAGTAFLEAAKIQRESLQSKHEAAQSYVDAGTCFKKADNEEAVKAYGEAIDIF 112

Query: 428 TDM 436
           TDM
Sbjct: 113 TDM 115


>SB_37953| Best HMM Match : Myco_haema (HMM E-Value=4.1)
          Length = 838

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 184 HFSEAPQKSKRP*TVISEQLTYSSGQEVASS 276
           HF++ P++  +P  V S++L+Y+S  E+  S
Sbjct: 221 HFADVPEQHWKPRHVYSDRLSYNSNDEMTPS 251


>SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)
          Length = 996

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +1

Query: 388 RGRVLSPESDRDLHRYGSFHCGCQTTPEHCGVYETECVDLVGAMQHYEQA--ADYFRGEE 561
           R + ++    RD H      CG + +  +C  YE EC    G   HY +         +E
Sbjct: 28  RVKQITKRHTRDQHHKECGRCGAKHSTGNCRAYEAEC-HKCGKRNHYARMCWGGAKTKDE 86

Query: 562 STSFRQ 579
           +TS RQ
Sbjct: 87  TTSERQ 92


>SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2)
          Length = 108

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 412 SDRDLHRYGSFHCGCQTTPEHCGVYETECV 501
           +D D +RY  F CG   +PE CGV  T CV
Sbjct: 77  NDWDANRY--FKCG-GPSPEECGVPHTCCV 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,034,309
Number of Sequences: 59808
Number of extensions: 312101
Number of successful extensions: 923
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)