Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060187.seq
         (631 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    25   2.0  
AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled ...    24   3.5  
AJ439353-2|CAD27924.1|  612|Anopheles gambiae putative G-protein...    24   3.5  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   8.0  

>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 460 TTPEHCGVYETECVDLVGA-MQHYEQAA 540
           TTPEH      E V+ V A M+H+ Q A
Sbjct: 673 TTPEHAAAVAEEAVERVHAWMRHHLQLA 700


>AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled
           receptor protein.
          Length = 611

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 380 HISCNS*KHLQNWWQHHGEHQLSSGAV 300
           ++S    + L N   H G HQLSSG V
Sbjct: 97  NVSTGQNESLANLLLHPGVHQLSSGLV 123


>AJ439353-2|CAD27924.1|  612|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 612

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 380 HISCNS*KHLQNWWQHHGEHQLSSGAV 300
           ++S    + L N   H G HQLSSG V
Sbjct: 98  NVSTGQNESLANLLLHPGVHQLSSGLV 124


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 493 ECVDLVGAMQHYEQAADYFRGEESTS 570
           EC +L  AM      AD+ R EE +S
Sbjct: 618 ECPELTKAMDGVTYIADHTRKEEESS 643


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,184
Number of Sequences: 2352
Number of extensions: 11108
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61468785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)